RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 DPY19L2P2Q6ZN68 376 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 LGALS13Q9UHV8 139 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 TPRP12270 2363 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 RGPD3A6NKT7 1758 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 TRAV18A0A075B6X5 111 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 IGHV3OR16-12A0A075B7B8 117 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 B9A039 149 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 C6orf52Q5T4I8 152 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 HES5Q5TA89 166 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 SERPINA11Q86U17 422 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 NOXO1Q8NFA2 376 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 PCNPQ8WW12 178 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 OR5B12Q96R08 314 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 MIOXQ9UGB7 285 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 OAZ3Q9UMX2 235 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 RNF6Q9Y252 685 aa8.26□□□□□ -1.09
LIMCH1-202ENST00000381753 OR2A25A4D2G3 310 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 SRRM3A6NNA2 597 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 SDCBPO00560 298 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 LOXL3P58215 753 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 UBE2G2P60604 165 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 FBXW9Q5XUX1 488 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 KIRREL2Q6UWL6 708 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 OR7G2Q8NG99 324 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 OR1F12Q8NHA8 337 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 SLC25A40Q8TBP6 338 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 STK35Q8TDR2 534 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 NEU4Q8WWR8 484 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 EDARADDQ8WWZ3 215 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 NMNAT3Q96T66 252 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 NMES1Q9C002 83 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 A0A1W2PQM1 296 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 AIPO00170 330 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 SMIM17P0DL12 118 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 ARRB2P32121 409 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 RAB4BP61018 213 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 LTBQ06643 244 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 KRBOX4Q5JUW0 171 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 CATSPERDQ86XM0 798 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 OR8H3Q8N146 312 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 GRPEL2Q8TAA5 225 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 ZFAND1Q8TCF1 268 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 ANKRD9Q96BM1 317 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 SIGLEC12Q96PQ1 595 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 ZNF665Q9H7R5 613 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 GLTPQ9NZD2 209 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 LOC105371242A0A075B767 164 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 LOC100130705A0A1B0GUX0 176 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 K7ESF4 209 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 HOXA6P31267 233 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 THBS3P49746 956 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 DEFA5Q01523 94 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 P2RY14Q15391 338 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 ZNF791Q3KP31 576 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 KDM4DQ6B0I6 523 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 ZNF534Q76KX8 674 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 OR56B1Q8NGI3 324 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 ZNF501Q96CX3 271 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 SNRNP40Q96DI7 357 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 C4orf45Q96LM5 186 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 GPR137Q96N19 417 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 LRRC3BQ96PB8 259 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 NUDT16L1Q9BRJ7 211 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 NMNAT1Q9HAN9 279 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 FAM60AQ9NP50 221 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 OR2S2Q9NQN1 319 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 SIRT3Q9NTG7 399 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 SLCO1B1Q9Y6L6 691 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 TJP1Q07157 1748 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 A0A087WV62 115 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 AGAP14A8MT82 685 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 RAC3P60763 192 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 PABPC1L2AQ5JQF8 200 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 TMEM150AQ86TG1 271 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 ARL11Q969Q4 196 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 OR52A1Q9UKL2 312 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 RNF24Q9Y225 148 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 MYH14Q7Z406 1995 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 KDM3BQ7LBC6 1761 aa8.25□□□□□ -1.09
LIMCH1-202ENST00000381753 IFNL4K9M1U5 179 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 APOBEC3AP31941 199 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 SELENOWP63302 87 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 ZNF91Q05481 1191 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 SKP2Q13309 424 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 GTDC1Q4AE62 458 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 HIKESHIQ53FT3 197 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 Q5PR19 223 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 EPGNQ6UW88 154 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 C20orf204Q6ZNR8 217 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 SLC22A18ASQ8N1D0 253 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 LYG1Q8N1E2 194 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 DNAJC22Q8N4W6 341 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 RASD2Q96D21 266 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 ZG16BQ96DA0 208 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 ZNF816-ZNF321PA0A0X1KG74 233 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 TMEM72A0PK05 275 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 OR2M5A3KFT3 312 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 E9PLN8 166 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 SSX5O60225 188 aa8.24□□□□□ -1.09
LIMCH1-202ENST00000381753 MED6O75586 246 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms