RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 ZNF550Q7Z398 422 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 RPS19BP1Q86WX3 136 aaKnown RBP2.05□□□□□ -2.08
SCFD1-219ENST00000556413 ERI1Q8IV48 349 aaKnown RBP2.05□□□□□ -2.08
SCFD1-219ENST00000556413 GCNT2Q8N0V5 402 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 CA13Q8N1Q1 262 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 ZNF619Q8N2I2 560 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 TMEM156Q8N614 296 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 TMCO5AQ8N6Q1 288 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 ZNF433Q8N7K0 673 aaPredicted RBP2.05□□□□□ -2.08
SCFD1-219ENST00000556413 TPRX1Q8N7U7 411 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 PRELID2Q8N945 189 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 GPATCH11Q8N954 259 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 SPC24Q8NBT2 197 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 OR2M7Q8NG81 312 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 OR4F17Q8NGA8 305 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 OR5M1Q8NGP8 315 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 RFESDQ8TAC1 157 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 CD200R1Q8TD46 325 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 ASZ1Q8WWH4 475 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 SLC13A3Q8WWT9 602 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 PTP4A1Q93096 173 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 UCN3Q969E3 161 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 IL22RA2Q969J5 263 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 RAD51AP1Q96B01 352 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 PPWD1Q96BP3 646 aaKnown RBP2.05□□□□□ -2.08
SCFD1-219ENST00000556413 FOPNLQ96NB1 174 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 BIRC8Q96P09 236 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 OR4F4Q96R69 305 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 BPIFA3Q9BQP9 254 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 OR8D2Q9GZM6 311 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 TSPY26PQ9H489 355 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 ANKHQ9HCJ1 492 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 KCNJ16Q9NPI9 418 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 TREX1Q9NSU2 369 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 ZNHIT6Q9NWK9 470 aaKnown RBP2.05□□□□□ -2.08
SCFD1-219ENST00000556413 HPF1Q9NWY4 346 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 SPATA7Q9P0W8 599 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 RNF14Q9UBS8 474 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 MAD1L1Q9Y6D9 718 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 BZW2Q9Y6E2 419 aaKnown RBP2.05□□□□□ -2.08
SCFD1-219ENST00000556413 SPACA6W5XKT8 324 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 SETD2Q9BYW2 2564 aaPredicted RBP2.05□□□□□ -2.08
SCFD1-219ENST00000556413 FBN3Q75N90 2809 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 FBN1P35555 2871 aaKnown RBP2.05□□□□□ -2.08
SCFD1-219ENST00000556413 MYO7BQ6PIF6 2116 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 NAV3Q8IVL0 2385 aa2.05□□□□□ -2.08
SCFD1-219ENST00000556413 MFSD2BA6NFX1 497 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SAGE2PA6NJ88 616 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 H0YC42 278 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 PSMD12O00232 456 aaPredicted RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 ERI3O43414 337 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 KLHL41O60662 606 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 PSIP1O75475 530 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SNRNP200O75643 2136 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 TRAPPC6AO75865 159 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 NSA2O95478 260 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CLDN9O95484 217 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 ECDO95905 644 aaPredicted RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 MBD3O95983 291 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 FN1P02751 2386 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CATP04040 527 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 RPN2P04844 631 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SFTPBP07988 381 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 ERGP11308 486 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SLCO1A2P46721 670 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 PITPNBP48739 271 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CYB561P49447 251 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 STARP49675 285 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SSR4P51571 173 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 ZNF136P52737 540 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CDKN2DP55273 166 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 FBXW4P57775 412 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 REEP5Q00765 189 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 PRDX1Q06830 199 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 POLEQ07864 2286 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CDH17Q12864 832 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 DDX39BQ13838 428 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SERTAD2Q14140 314 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SPA17Q15506 151 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 TSC22D1Q15714 1073 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 NDUFA9Q16795 377 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 PARP6Q2NL67 630 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 DEFB113Q30KQ7 82 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 HSP90AA5PQ58FG0 334 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 TTC23LQ6PF05 361 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 AGTRAPQ6RW13 159 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 B3GLCTQ6Y288 498 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 MED13LQ71F56 2210 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 BZW1Q7L1Q6 419 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 PEX26Q7Z412 305 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 KRT77Q7Z794 578 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 KIAA1328Q86T90 577 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 YRDCQ86U90 279 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 ZGRF1Q86YA3 2104 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 C9orf40Q8IXQ3 194 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CEP112Q8N8E3 955 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 MFSD9Q8NBP5 474 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 ACBD4Q8NC06 268 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 APCDD1LQ8NCL9 501 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 OR10G3Q8NGC4 313 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms