RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 LCN6P62502 163 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 DCDC5Q6ZRR9 648 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 VASH1Q7L8A9 365 aaPredicted RBP16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 LHX4Q969G2 390 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 TRIM15Q9C019 465 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 C5orf63A6NC05 138 aa16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 RBM34P42696 430 aaKnown RBP16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 MRPL19P49406 292 aaKnown RBP16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 TAS2R41P59536 307 aa16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 CTXN1P60606 82 aa16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 PIN1Q13526 163 aaPredicted RBP16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 C1orf87Q8N0U7 546 aa16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 BHLHE23Q8NDY6 225 aa16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 LIPHQ8WWY8 451 aa16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 ZNF582Q96NG8 517 aaPredicted RBP16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 TMCC3Q9ULS5 477 aa16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 SH3GLB1Q9Y371 365 aa16.83■□□□□ 0.28
SQSTM1-215ENST00000514093 IGHV1-69DA0A0B4J2H0 117 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 ZNF816-ZNF321PA0A0X1KG74 233 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 IGHV1-69P01742 117 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 HLA-DPB1P04440 258 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 DBHP09172 617 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 CRYBA2P53672 197 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 SCRN3Q0VDG4 424 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 ZNF181Q2M3W8 571 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 AGKQ53H12 422 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 PATL1Q86TB9 770 aaKnown RBP16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 FNDC8Q8TC99 324 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 COG8Q96MW5 612 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 WDFY2Q96P53 400 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 EBF4Q9BQW3 602 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 MMADHCQ9H3L0 296 aaPredicted RBP16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 CTSZQ9UBR2 303 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 RIMS3Q9UJD0 308 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 HIF3AQ9Y2N7 669 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 MED31Q9Y3C7 131 aa16.82■□□□□ 0.28
SQSTM1-215ENST00000514093 FBP2O00757 339 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 POLR3GO15318 223 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 FSTL3O95633 263 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 VIMP08670 466 aaKnown RBP16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 IRF2P14316 349 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 PSMB10P40306 273 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 PRSS12P56730 875 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 EGR3Q06889 387 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 KPRPQ5T749 579 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 SAMD5Q5TGI4 173 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 GDPGP1Q6ZNW5 385 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 MICU2Q8IYU8 434 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 MREGQ8N565 214 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 SCCPDHQ8NBX0 429 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 RASSF4Q9H2L5 321 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 C16orf95Q9H693 158 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 WDR76Q9H967 626 aa16.81■□□□□ 0.28
SQSTM1-215ENST00000514093 IGF2P01344 180 aa16.8■□□□□ 0.28
SQSTM1-215ENST00000514093 ARF6P62330 175 aa16.8■□□□□ 0.28
SQSTM1-215ENST00000514093 METTL11BQ5VVY1 283 aa16.8■□□□□ 0.28
SQSTM1-215ENST00000514093 FBXW12Q6X9E4 464 aa16.8■□□□□ 0.28
SQSTM1-215ENST00000514093 LDLRAD3Q86YD5 345 aa16.8■□□□□ 0.28
SQSTM1-215ENST00000514093 LRRC75AQ8NAA5 344 aa16.8■□□□□ 0.28
SQSTM1-215ENST00000514093 MRAPQ8TCY5 172 aa16.8■□□□□ 0.28
SQSTM1-215ENST00000514093 UFSP2Q9NUQ7 469 aa16.8■□□□□ 0.28
SQSTM1-215ENST00000514093 TET2Q6N021 2002 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 OR5F1O95221 314 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 IDH3AP50213 366 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 MAB21L1Q13394 359 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 PRAMEF6Q5VXH4 476 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 CD276Q5ZPR3 534 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 SFRP4Q6FHJ7 346 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 DHRS7BQ6IAN0 325 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 DHDDSQ86SQ9 333 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 BOLLQ8N9W6 283 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 PCYOX1LQ8NBM8 494 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 OR51A7Q8NH64 312 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 OR1F12Q8NHA8 337 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 SIRPDQ9H106 197 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 SEMA6AQ9H2E6 1030 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 TMEM100Q9NV29 134 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 ERVK-18Q9QC07 812 aa16.79■□□□□ 0.28
SQSTM1-215ENST00000514093 TRAV27A0A087WT01 109 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 OR6C6A6NF89 314 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 A6NIZ1 184 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 FAM20BO75063 409 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 OPN1MWP04001 364 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 LIPFP07098 398 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 OPN1MW2P0DN77 364 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 OPN1MW3P0DN78 364 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 IFI30P13284 250 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 FPR3P25089 353 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 OR1E2P47887 323 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 NPY4RP50391 375 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 RAP1BP61224 184 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 RAP1AP62834 184 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 CCDC92Q53HC0 331 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 PIP4P2Q8N4L2 257 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 OR5L1Q8NGL2 311 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 OR10A6Q8NH74 314 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 RASD2Q96D21 266 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 BPIFA2Q96DR5 249 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 CGREF1Q99674 301 aa16.78■□□□□ 0.28
SQSTM1-215ENST00000514093 WACQ9BTA9 647 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms