RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LAIR2Q6ISS4 152 aa25.61■■□□□ 1.69
LIMCH1-211ENST00000509638 NEUROG1Q92886 237 aa25.61■■□□□ 1.69
LIMCH1-211ENST00000509638 MNTQ99583 582 aa25.61■■□□□ 1.69
LIMCH1-211ENST00000509638 KRT80Q6KB66 452 aa25.61■■□□□ 1.69
LIMCH1-211ENST00000509638 CXCR4P61073 352 aa25.6■■□□□ 1.69
LIMCH1-211ENST00000509638 HGFACQ04756 655 aa25.6■■□□□ 1.69
LIMCH1-211ENST00000509638 OR51B6Q9H340 312 aa25.6■■□□□ 1.69
LIMCH1-211ENST00000509638 Q9H521 79 aa25.6■■□□□ 1.69
LIMCH1-211ENST00000509638 RAI1Q7Z5J4 1906 aaPredicted RBP25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 PRR32B1ATL7 298 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 ZNF670-ZNF695F2Z2N8 137 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 OR2T7P0C7T2 308 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 OPRL1P41146 370 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 WNT5AP41221 380 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 SNTB2Q13425 540 aaKnown RBP25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 TAF13Q15543 124 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 LRRN1Q6UXK5 716 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 OR2T27Q8NH04 317 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 ASB17Q8WXJ9 295 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 RHNO1Q9BSD3 238 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 EXOGQ9Y2C4 368 aaKnown RBP25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 ATP23Q9Y6H3 246 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 AKAP6Q13023 2319 aa25.59■■□□□ 1.69
LIMCH1-211ENST00000509638 F5H5K5 113 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 ABHD16AO95870 558 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 FAM157BP0CG42 384 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 PRF1P14222 555 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 ACTC1P68032 377 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 ACTA1P68133 377 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 RAB40BQ12829 278 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 KRTAP27-1Q3LI81 207 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 ZNF672Q499Z4 452 aaPredicted RBP25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 ZNF101Q8IZC7 436 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 LILRB1Q8NHL6 650 aaPredicted RBP25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 SPTSSAQ969W0 71 aa25.58■■□□□ 1.69
LIMCH1-211ENST00000509638 A0A1W2PQL4 384 aaPredicted RBP25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 J3QRE1 110 aa25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 PSMD9O00233 223 aa25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 PHYHO14832 338 aa25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 SLC15A1P46059 708 aa25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 RSPO1Q2MKA7 263 aaPredicted RBP25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 ZNF322Q6U7Q0 402 aaPredicted RBP25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 SSX6Q7RTT6 188 aa25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 AKAP1Q92667 903 aaKnown RBP eCLIP25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 GRIP1Q9Y3R0 1128 aa25.57■■□□□ 1.68
LIMCH1-211ENST00000509638 M0R135 149 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 XPNPEP2O43895 674 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 H2BFMP0C1H6 154 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 NR4A1P22736 598 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 HSD11B1P28845 292 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 GRB2P62993 217 aaKnown RBP25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 KCTD18Q6PI47 426 aaPredicted RBP25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 RFPL4BQ6ZWI9 263 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 RHOUQ7L0Q8 258 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 NUP37Q8NFH4 326 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 BPIFB6Q8NFQ5 453 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 ZNF799Q96GE5 643 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 C4orf45Q96LM5 186 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 MRPS18AQ9NVS2 196 aaKnown RBP25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 MYRFQ9Y2G1 1151 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 SPEF1Q9Y4P9 236 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 PCDHGB1Q9Y5G3 927 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 ITPR2Q14571 2701 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 SMPD2O60906 423 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 FAM20BO75063 409 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 FADS2O95864 444 aaKnown RBP25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 PCSK6P29122 969 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 OTX1P32242 354 aaPredicted RBP25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 NKX6-1P78426 367 aaPredicted RBP25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 KLHL22Q53GT1 634 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 VHLLQ6RSH7 139 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 KRT77Q7Z794 578 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 OR52I1Q8NGK6 324 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 KCNJ15Q99712 375 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 SLCO1C1Q9NYB5 712 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 EIF3KQ9UBQ5 218 aaKnown RBP25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 IKZF2Q9UKS7 526 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 LRP12Q9Y561 859 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 PCDHGB5Q9Y5G0 923 aa25.56■■□□□ 1.68
LIMCH1-211ENST00000509638 E7EQL1 145 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 GPRIN2O60269 458 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 ICMTO60725 284 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 ACSM4P0C7M7 580 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 SLC6A9P48067 706 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 ROM1Q03395 351 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 C6orf141Q5SZD1 244 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 ARL9Q6T311 187 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 ABHD4Q8TB40 342 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 OR8B4Q96RC9 309 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 DCLRE1CQ96SD1 692 aaKnown RBP25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 UBTD1Q9HAC8 227 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 CA10Q9NS85 328 aa25.55■■□□□ 1.68
LIMCH1-211ENST00000509638 SLC1A7O00341 560 aa25.54■■□□□ 1.68
LIMCH1-211ENST00000509638 HS3ST1O14792 307 aa25.54■■□□□ 1.68
LIMCH1-211ENST00000509638 PRKXP51817 358 aa25.54■■□□□ 1.68
LIMCH1-211ENST00000509638 UCP2P55851 309 aa25.54■■□□□ 1.68
LIMCH1-211ENST00000509638 TPTEP56180 551 aa25.54■■□□□ 1.68
LIMCH1-211ENST00000509638 ACBD7Q8N6N7 88 aa25.54■■□□□ 1.68
LIMCH1-211ENST00000509638 MROQ9BYG7 248 aa25.54■■□□□ 1.68
LIMCH1-211ENST00000509638 PLCXD1Q9NUJ7 323 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms