RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CMTM8Q8IZV2 173 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 LILRB2Q8N423 598 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ZFP41Q8N8Y5 198 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 NUP43Q8NFH3 380 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF587Q96SQ5 575 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 UNKLQ9H9P5 680 aaKnown RBP4.81□□□□□ -1.64
SYNE1-220ENST00000471834 MMP26Q9NRE1 261 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 OR1A2Q9Y585 309 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM14AQ9Y6G1 99 aa4.81□□□□□ -1.64
SYNE1-220ENST00000471834 CENPVL1A0A0U1RR11 272 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 F5H5P2 479 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 DXOO77932 396 aaKnown RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 SFTPBP07988 381 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OR4E1P0C645 316 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 SLC6A6P31641 620 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 RUNX2Q13950 521 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 HMGN3Q15651 99 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 FAM76BQ5HYJ3 339 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM184AQ6ZMB5 413 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF836Q6ZNA1 936 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF565Q8N9K5 539 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 CHST14Q8NCH0 376 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OR7G2Q8NG99 324 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OR2G2Q8NGZ5 317 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 SLC25A43Q8WUT9 341 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ZCCHC14Q8WYQ9 949 aaKnown RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OR14A2Q96R54 314 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 PTDSS2Q9BVG9 487 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TMPRSS5Q9H3S3 457 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF705EA8MWA4 302 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 FARS2O95363 451 aaKnown RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 NPBWR1P48145 328 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TAS2R19P59542 299 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 SNRPNP63162 240 aaKnown RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 RASGEF1BQ0VAM2 473 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 MLF2Q15773 248 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 SSX2Q16385 188 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TCTN1Q2MV58 587 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM249Q2WGJ8 235 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 IER5LQ5T953 404 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 KCTD18Q6PI47 426 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM17Q86X19 198 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM255BQ8WV15 326 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 CD180Q99467 661 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 NEU1Q99519 415 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 RAB18Q9NP72 206 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 SERINC1Q9NRX5 453 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 A0A1B0GWJ7 208 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF724A8MTY0 619 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM150CB9EJG8 249 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 CLN5O75503 358 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 CNOT4O95628 575 aaKnown RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 NTN1O95631 604 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ADH1BP00325 375 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 GP1BBP13224 206 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 CEACAM1P13688 526 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 GTF2F2P13984 249 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 FBLP22087 321 aaKnown RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 EPHA8P29322 1005 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OTX2P32243 289 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ACVR1BP36896 505 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 RAB8AP61006 207 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 MEF2DQ14814 521 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 PRSS45Q7RTY3 260 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 MMP21Q8N119 569 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 PRR18Q8N4B5 295 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 RFLNBQ8N5W9 214 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OR4K17Q8NGC6 315 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 CASTOR1Q8WTX7 329 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 CCDC107Q8WV48 283 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 CPNE2Q96FN4 548 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 C12orf57Q99622 126 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 GPR174Q9BXC1 333 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ARL6Q9H0F7 186 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ENY2Q9NPA8 101 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 FLVCR2Q9UPI3 526 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TRAV8-7A0A075B6U6 113 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ST8SIA5O15466 376 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 LEFTY1O75610 366 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 NCR1O76036 304 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 IFNA10P01566 189 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 EDN3P14138 238 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 NAA10P41227 235 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 HNF4GQ14541 408 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF542PQ5EBM4 170 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 BORCS8Q96FH0 119 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 DYNLRB1Q9NP97 96 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 MMP25Q9NPA2 562 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 WIF1Q9Y5W5 379 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 TRGV8A0A0C4DH27 118 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 BLACEA4D250 179 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 MEIS3P1A6NDR6 274 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 C9JQL5 133 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 DUX1O43812 170 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 CSTBP04080 98 aaKnown RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OTX1P32242 354 aaPredicted RBP4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OR5T1Q8NG75 326 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OR5D16Q8NGK9 328 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 OR6N2Q8NGY6 317 aa4.8□□□□□ -1.64
SYNE1-220ENST00000471834 PRAP1Q96NZ9 151 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms