RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 OR2M2Q96R28 347 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 GHITMQ9H3K2 345 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 MOB1AQ9H8S9 216 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 A0A0C4DFX4 3053 aa11.48□□□□□ -0.57
SPTLC1-201ENST00000262554 TMEM272A0A1B0GTI8 110 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 LOC101059948A0A1B0GTJ6 334 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 FAM172BPA6NC97 362 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 SYT7O43581 403 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 SERPINA7P05543 415 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 PTHLHP12272 177 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 CD59P13987 128 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 SRD5A2P31213 254 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 PSMA6P60900 246 aaKnown RBP11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 IFITM2Q01629 132 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 SPOCK1Q08629 439 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 POU4F3Q15319 338 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 ACER2Q5QJU3 275 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 ELFN2Q5R3F8 820 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 OLFML2AQ68BL7 652 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 DNM1P46Q6ZS02 220 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 CREB3L2Q70SY1 520 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 ESX1Q8N693 406 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 OR6N1Q8NGY5 312 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 SLC25A28Q96A46 364 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 FOXRED1Q96CU9 486 aaPredicted RBP11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 C20orf85Q9H1P6 137 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 ATG5Q9H1Y0 275 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 OR51J1Q9H342 316 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 P4HTMQ9NXG6 502 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 GLTPQ9NZD2 209 aa11.47□□□□□ -0.57
SPTLC1-201ENST00000262554 DCDC2BA2VCK2 349 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 GMDSO60547 372 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 LMX1BO60663 402 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 RBBP9O75884 186 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 C1QBP02746 253 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 PSMB1P20618 241 aaKnown RBP11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 ERP29P30040 261 aaKnown RBP11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 CSNK1A1P48729 337 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 CAPZA1P52907 286 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 CDK10Q15131 360 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 GSG1Q2KHT4 349 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 B3GNTL1Q67FW5 361 aaPredicted RBP11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 SFRP4Q6FHJ7 346 aaPredicted RBP11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 LIX1LQ8IVB5 337 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 JAGN1Q8N5M9 183 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 OR9K2Q8NGE7 335 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 OR51A2Q8NGJ7 313 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 DEDD2Q8WXF8 326 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 FGGYQ96C11 551 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 TAS2R8Q9NYW2 309 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 ASH2LQ9UBL3 628 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 CGGBP1Q9UFW8 167 aaPredicted RBP11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 VPS13AQ96RL7 3174 aa11.46□□□□□ -0.57
SPTLC1-201ENST00000262554 TRAV18A0A075B6X5 111 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 IGHV3-15A0A0B4J1V0 119 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 A0A1B0GVI7 797 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 C9orf172C9J069 976 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 H7C417 338 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 TNFSF11O14788 317 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 RGS13O14921 159 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 FAUP35544 74 aaKnown RBP11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 GNALP38405 381 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 LSM6P62312 80 aaKnown RBP11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 SF3B4Q15427 424 aaKnown RBP eCLIP11.46□□□□□ -0.583e-6■■■■■ 40.4
SPTLC1-201ENST00000262554 C1orf100Q5SVJ3 147 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 TMEM164Q5U3C3 297 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 CD276Q5ZPR3 534 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 OR14L1PQ8NHC6 308 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 KCNE4Q8WWG9 221 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 GIMAP1Q8WWP7 306 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 TMEM54Q969K7 222 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 DACT3Q96B18 629 aaPredicted RBP11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 SORCS2Q96PQ0 1159 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 SPRY4Q9C004 299 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 KCNK15Q9H427 330 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 PAQR5Q9NXK6 330 aaPredicted RBP11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 STMN3Q9NZ72 180 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 MTFP1Q9UDX5 166 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 MRPS18BQ9Y676 258 aaKnown RBP11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 MED12Q93074 2177 aa11.46□□□□□ -0.58
SPTLC1-201ENST00000262554 A0A0G2JMM0 328 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 A0A0J9YW62 118 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 A0A1W2PPB8 328 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 LOC390937A0A1W2PQ73 354 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 A0A1W2PRS3 328 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 CIB4A0PJX0 185 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 KIR3DP1A8MWS1 328 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 DNPH1O43598 174 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 PEX14O75381 377 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 WDPCPO95876 746 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 CSF1P09603 554 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 MSR1P21757 451 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 BDKRB2P30411 391 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 CYB561P49447 251 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 CLDN6P56747 220 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 GRB2P62993 217 aaKnown RBP11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 FCN2Q15485 313 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 SGCAQ16586 387 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 TMEM255AQ5JRV8 349 aa11.45□□□□□ -0.58
SPTLC1-201ENST00000262554 C10orf128Q5T292 105 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms