RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LRRC8CQ8TDW0 803 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 SAMD8Q96LT4 415 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 CCT8L2Q96SF2 557 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 TMEM246Q9BRR3 403 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 SSBP3Q9BWW4 388 aaPredicted RBP7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 CHIAQ9BZP6 476 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 SMURF2Q9HAU4 748 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 TMEM165Q9HC07 324 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 GCM1Q9NP62 436 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 POLE4Q9NR33 117 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 CYSLTR2Q9NS75 346 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 POLR3KQ9Y2Y1 108 aaPredicted RBP7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 MED31Q9Y3C7 131 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 ADAM18Q9Y3Q7 739 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 SNX13Q9Y5W8 968 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 STAB2Q8WWQ8 2551 aa7.22□□□□□ -1.25
SHKBP1-220ENST00000599716 IGHV2-70DA0A0C4DH43 119 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 LOC100653049A0A140TA62 436 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 POM121CA8CG34 1229 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 MLNRO43193 412 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 KRT34O76011 436 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 PLATP00750 562 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 KNG1P01042 644 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 HLA-DPB1P04440 258 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 ZNF26P17031 533 aaPredicted RBP7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 MSR1P21757 451 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 TNFSF4P23510 183 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 MDH2P40926 338 aaKnown RBP7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 PMELP40967 661 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 GPR4P46093 362 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 SLC9A3P48764 834 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 ARHGDIAP52565 204 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 RAG2P55895 527 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 FGF12P61328 243 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 GNB2P62879 340 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 PRB3Q04118 309 aaPredicted RBP7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 LRRC23Q53EV4 343 aaPredicted RBP7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 SLC27A4Q6P1M0 643 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 BRICD5Q6PL45 260 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 TBPL2Q6SJ96 375 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 FOXL2NBQ6ZUU3 175 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 VASH1Q7L8A9 365 aaPredicted RBP7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 SLC30A8Q8IWU4 369 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 NRMQ8IXM6 262 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 PDZD9Q8IXQ8 264 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 DPP10Q8N608 796 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 ZDHHC16Q969W1 377 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 DACT3Q96B18 629 aaPredicted RBP7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 UPRTQ96BW1 309 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 BPIFA2Q96DR5 249 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 TPD52L3Q96J77 140 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 MEGF10Q96KG7 1140 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 Q96M85 177 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 RBP7Q96R05 134 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 SLITRK2Q9H156 845 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 EVA1AQ9H8M9 152 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 ELOVL3Q9HB03 270 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 C1RLQ9NZP8 487 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 HIF3AQ9Y2N7 669 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 TENM2Q9NT68 2774 aa7.21□□□□□ -1.26
SHKBP1-220ENST00000599716 C12orf71A8MTZ7 269 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 CENPBD1B2RD01 187 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 C22orf46C9J442 243 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 CLDN34H7C241 214 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 RER1O15258 196 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 SGCEO43556 437 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 ICMTO60725 284 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 OR5F1O95221 314 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 TSPAN15O95858 294 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 CTLA4P16410 223 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 TNFRSF1AP19438 455 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 GSTM3P21266 225 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 KITLGP21583 273 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 ANOS1P23352 680 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 LIPAP38571 399 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 RBM34P42696 430 aaKnown RBP7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 MTNR1AP48039 350 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 MEP1BQ16820 701 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 CCDC92Q53HC0 331 aaPredicted RBP7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 MESTQ5EB52 335 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 ZMAT1Q5H9K5 638 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 PRAMEF6Q5VXH4 476 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 NANOGP8Q6NSW7 305 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 CORO6Q6QEF8 472 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 BTNL3Q6UXE8 466 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 UNQ6126/PRO20091Q6UXV3 157 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 C17orf107Q6ZR85 190 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 CCDC80Q76M96 950 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 HDDC2Q7Z4H3 204 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 VTCN1Q7Z7D3 282 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 FITM2Q8N6M3 262 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 BOLLQ8N9W6 283 aaKnown RBP7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 RAB40AQ8WXH6 277 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 RASD2Q96D21 266 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 HAVCR1Q96D42 359 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 NUDT16L1Q9BRJ7 211 aaKnown RBP7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 PCGF1Q9BSM1 259 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 ALG12Q9BV10 488 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 RASSF4Q9H2L5 321 aa7.2□□□□□ -1.26
SHKBP1-220ENST00000599716 MAN2C1Q9NTJ4 1040 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms