RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, human

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB3-210	ENST00000542817	SPOCK3	Q9BQ16	436 aa		9.28	□□□□□ -0.92
NPIPB3-210	ENST00000542817	USB1	Q9BQ65	265 aa	Known RBP	9.28	□□□□□ -0.92
NPIPB3-210	ENST00000542817	OR2H1	Q9GZK4	316 aa		9.28	□□□□□ -0.92
NPIPB3-210	ENST00000542817	PLCXD1	Q9NUJ7	323 aa		9.28	□□□□□ -0.92
NPIPB3-210	ENST00000542817	FKBP14	Q9NWM8	211 aa		9.28	□□□□□ -0.92
NPIPB3-210	ENST00000542817	RSL24D1	Q9UHA3	163 aa	Known RBP	9.28	□□□□□ -0.92
NPIPB3-210	ENST00000542817	EXOG	Q9Y2C4	368 aa	Known RBP	9.28	□□□□□ -0.92
NPIPB3-210	ENST00000542817	SPG11	Q96JI7	2443 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	LOC100509620	A0A075B734	347 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817		A0A1W2PPR1	153 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	FAM221A	A4D161	298 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	TUBAL3	A6NHL2	446 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	PRSS44	E7EML9	344 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	SYNGR3	O43761	229 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	XPNPEP2	O43895	674 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CECR9	P0C854	216 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CD79A	P11912	226 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CRYGS	P22914	178 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	COL8A1	P27658	744 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	NAA10	P41227	235 aa	Predicted RBP	9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	MTNR1A	P48039	350 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	BLVRA	P53004	296 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ADAM8	P78325	824 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ZNF85	Q03923	595 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	HGFAC	Q04756	655 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CBX3	Q13185	183 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	AQP6	Q13520	282 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	DOC2B	Q14184	412 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	RAB39A	Q14964	217 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	GSG1	Q2KHT4	349 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	PABPC1L2A	Q5JQF8	200 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	C6orf141	Q5SZD1	244 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ZNF684	Q5T5D7	378 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	C1QTNF12	Q5T7M4	302 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ZNF774	Q6NX45	483 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	SLC16A9	Q7RTY1	509 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CCDC36	Q8IYA8	594 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	OR51G2	Q8NGK0	314 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	OTOS	Q8NHW6	89 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	SLC7A6	Q92536	515 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	GGH	Q92820	318 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	RNFT2	Q96EX2	444 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ZC3HAV1L	Q96H79	300 aa	Known RBP	9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	DACH2	Q96NX9	599 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	SIGLEC11	Q96RL6	698 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	GDF2	Q9UK05	429 aa	Predicted RBP	9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	MYRF	Q9Y2G1	1151 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	AMDHD2	Q9Y303	409 aa		9.27	□□□□□ -0.93
NPIPB3-210	ENST00000542817	MAP1A	P78559	2803 aa	Predicted RBP	9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	TRIM64	A6NGJ6	449 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	TRIM64B	A6NI03	449 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	C12orf71	A8MTZ7	269 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ATP6V1G1	O75348	118 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	UBL3	O95164	117 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	FARS2	O95363	451 aa	Known RBP	9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	HLA-DQA2	P01906	255 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	SERPINA5	P05154	406 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	EPX	P11678	715 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ZNF35	P13682	527 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CALCR	P30988	508 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	KIR2DL3	P43628	341 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ZNF83	P51522	516 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	RPS7	P62081	194 aa	Known RBP	9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	SPOCK1	Q08629	439 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	C3orf36	Q3SXR2	165 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	SLC36A2	Q495M3	483 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	HIST2H2BC	Q6DN03	193 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	MEX3B	Q6ZN04	569 aa	Known RBP	9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	DCXR	Q7Z4W1	244 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	DPPA2	Q7Z7J5	298 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	WFDC8	Q8IUA0	241 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	OR52I1	Q8NGK6	324 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	RNF133	Q8WVZ7	376 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	POM121L2	Q96KW2	1035 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CNBD2	Q96M20	576 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	HS3ST6	Q96QI5	342 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CNN2	Q99439	309 aa	Known RBP	9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	TMEM204	Q9BSN7	226 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	WAC	Q9BTA9	647 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	MED18	Q9BUE0	208 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ABHD6	Q9BV23	337 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	FGF20	Q9NP95	211 aa	Predicted RBP	9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	DDX28	Q9NUL7	540 aa	Known RBP	9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CLN6	Q9NWW5	311 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	PSORS1C1	Q9UIG5	152 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	TIMM10B	Q9Y5J6	103 aa		9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	SETX	Q7Z333	2677 aa	Known RBP	9.26	□□□□□ -0.93
NPIPB3-210	ENST00000542817	AKAP6	Q13023	2319 aa		9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817		A0A1W2PQL4	384 aa	Predicted RBP	9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817	C5orf63	A6NC05	138 aa		9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817	MAGEB4	O15481	346 aa	Predicted RBP	9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817	ABHD16A	O95870	558 aa		9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817	IGHA1	P01876	353 aa		9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817	HNRNPC	P07910	306 aa	Known RBP eCLIP	9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817	HTR1A	P08908	422 aa		9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817	DBH	P09172	617 aa		9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817	SPARC	P09486	303 aa		9.25	□□□□□ -0.93
NPIPB3-210	ENST00000542817	CCL2	P13500	99 aa		9.25	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms