RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 BEAN1Q3B7T3 259 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 ZNF404Q494X3 552 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 WDR25Q64LD2 544 aaPredicted RBP16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 NLRC3Q7RTR2 1065 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 MOGAT3Q86VF5 341 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 SLC30A8Q8IWU4 369 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 C19orf18Q8NEA5 215 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 TBC1D15Q8TC07 691 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 TMEM255BQ8WV15 326 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 SLC7A6Q92536 515 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 SGTBQ96EQ0 304 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 RBP7Q96R05 134 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 EMC7Q9NPA0 242 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 GMEB1Q9Y692 573 aa16.89■□□□□ 0.29
SQSTM1-215ENST00000514093 CENPVL3A0A0U1RRI6 287 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 C3orf80F5H4A9 247 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 TNFRSF13BO14836 293 aaPredicted RBP16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 CFHR2P36980 270 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 PMELP40967 661 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 GUCA1AP43080 201 aaPredicted RBP16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 HTR5AP47898 357 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 STX1BP61266 288 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 C11orf65Q8NCR3 313 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 C10orf82Q8WW14 230 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 PTP4A1Q93096 173 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 CPPED1Q9BRF8 314 aaPredicted RBP16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 TXNIPQ9H3M7 391 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 CORO2BQ9UQ03 480 aa16.88■□□□□ 0.29
SQSTM1-215ENST00000514093 RYR3Q15413 4870 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 C12orf71A8MTZ7 269 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 IFNL4K9M1U5 179 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 PIN1P1O15428 100 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 TSPAN19P0C672 248 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 MSR1P21757 451 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 GUCY1A3Q02108 690 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 C2orf68Q2NKX9 166 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 OR2T2Q6IF00 324 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 ZNF841Q6ZN19 808 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 Q6ZSV7 163 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 FOXL2NBQ6ZUU3 175 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 IGFN1Q86VF2 1251 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 MAGEB18Q96M61 343 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 TBX15Q96SF7 602 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 ALG12Q9BV10 488 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 PCDHAC1Q9H158 963 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 ACOXLQ9NUZ1 547 aa16.87■□□□□ 0.29
SQSTM1-215ENST00000514093 GMNCA6NCL1 334 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 F5H5P2 479 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 DOK2O60496 412 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 TOX4O94842 621 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 CSF1P09603 554 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 NR2C1P13056 603 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 TUBG1P23258 451 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 RPL15P61313 204 aaKnown RBP16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 HOXA4Q00056 320 aaPredicted RBP16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 SELPLGQ14242 412 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 CYP51A1Q16850 503 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 ALG10Q5BKT4 473 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 TNFAIP8L3Q5GJ75 292 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 OTPQ5XKR4 325 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 DLEU7Q6UYE1 221 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 GATAD2BQ8WXI9 593 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 TAMM41Q96BW9 452 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 POLE4Q9NR33 117 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 TUBG2Q9NRH3 451 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 PTTG3PQ9NZH4 202 aa16.86■□□□□ 0.29
SQSTM1-215ENST00000514093 LRRC30A6NM36 301 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 ZNF879B4DU55 563 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 P2RY10O00398 339 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 PHYHO14832 338 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 MLNRO43193 412 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 ENSAO43768 121 aaKnown RBP16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 COX5BP10606 129 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 TNFRSF1BP20333 461 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 SRP9P49458 86 aaKnown RBP16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 RPL27P61353 136 aaKnown RBP16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 FAM189A2Q15884 450 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 EPGNQ6UW88 154 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 SYT9Q86SS6 491 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 PDZD9Q8IXQ8 264 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 ZSCAN4Q8NAM6 433 aaPredicted RBP16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 OR8G5Q8NG78 346 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 OR13G1Q8NGZ3 307 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 SLC26A7Q8TE54 656 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 TMEM239Q8WW34 195 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 TECTBQ96PL2 329 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 KIF17Q9P2E2 1029 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 USH1CQ9Y6N9 552 aa16.85■□□□□ 0.29
SQSTM1-215ENST00000514093 A0A0U1RQK1 487 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 TMEM120BA0PK00 339 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 NPIPB13A6NJU9 1138 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 NPIPB4C9JG80 1138 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 H7C1C5 153 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 SGCEO43556 437 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 PIP5K1CO60331 668 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 SHOX2O60902 331 aaPredicted RBP16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 MMP9P14780 707 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 RAC2P15153 192 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 IER3P46695 156 aa16.84■□□□□ 0.29
SQSTM1-215ENST00000514093 MTPNP58546 118 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms