RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 CLDN6P56747 220 aa12.1□□□□□ -0.47
GPC1-209ENST00000495100 RPL27P61353 136 aaKnown RBP12.1□□□□□ -0.47
GPC1-209ENST00000495100 FOXF1Q12946 379 aa12.1□□□□□ -0.47
GPC1-209ENST00000495100 RBMS2Q15434 407 aaKnown RBP12.1□□□□□ -0.47
GPC1-209ENST00000495100 TMEM81Q6P7N7 255 aa12.1□□□□□ -0.47
GPC1-209ENST00000495100 C12orf45Q8N5I9 185 aaPredicted RBP12.1□□□□□ -0.47
GPC1-209ENST00000495100 PAQR8Q8TEZ7 354 aa12.1□□□□□ -0.47
GPC1-209ENST00000495100 CTHRC1Q96CG8 243 aa12.1□□□□□ -0.47
GPC1-209ENST00000495100 RADILQ96JH8 1075 aa12.1□□□□□ -0.47
GPC1-209ENST00000495100 LINC00052Q96N35 136 aa12.1□□□□□ -0.47
GPC1-209ENST00000495100 OR52A1Q9UKL2 312 aa12.1□□□□□ -0.47
GPC1-209ENST00000495100 COL4A3Q01955 1670 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 ZNF318Q5VUA4 2279 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 TNFSF14O43557 240 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 NXPH3O95157 252 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 RBM34P42696 430 aaKnown RBP12.09□□□□□ -0.47
GPC1-209ENST00000495100 PPICP45877 212 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 EPHA4P54764 986 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 DLX5P56178 289 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 BDH1Q02338 343 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 SLC17A1Q14916 467 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 LINC01590Q5TEZ4 76 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 RNLSQ5VYX0 342 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 ATG4DQ86TL0 474 aaPredicted RBP12.09□□□□□ -0.47
GPC1-209ENST00000495100 PLXDC1Q8IUK5 500 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 C20orf196Q8IYI0 205 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 NEK7Q8TDX7 302 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 HAVCR1Q96D42 359 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 SDHAF3Q9NRP4 125 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 SPTBN1Q01082 2364 aaKnown RBP12.09□□□□□ -0.47
GPC1-209ENST00000495100 NBEAQ8NFP9 2946 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 ZFHX2Q9C0A1 2572 aaPredicted RBP12.09□□□□□ -0.47
GPC1-209ENST00000495100 CADP27708 2225 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 OBSL1O75147 1896 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 TRAV36DV7A0A075B6V5 113 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 OR4C45A6NMZ5 311 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 OGG1O15527 345 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 KLK2P20151 261 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 NUDT1P36639 197 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 KIR3DL2P43630 455 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 SKP2Q13309 424 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 RAB30Q15771 203 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 BAIAP2L2Q6UXY1 529 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 OR52N4Q8NGI2 321 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 MIB2Q96AX9 1013 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 ZBTB8AQ96BR9 441 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 SLC46A1Q96NT5 459 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 POTEKPQ9BYX7 375 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 PLXNA2O75051 1894 aa12.09□□□□□ -0.47
GPC1-209ENST00000495100 IGKV1D-43A0A0B4J1Z2 117 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 MEX3AA1L020 520 aaKnown RBP12.08□□□□□ -0.47
GPC1-209ENST00000495100 TMEM212A6NML5 194 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 CTAG2O75638 210 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 RRASP10301 218 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 ZNF43P17038 809 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 DPP4P27487 766 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 INSM1Q01101 510 aaPredicted RBP12.08□□□□□ -0.47
GPC1-209ENST00000495100 CAMK2BQ13554 666 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 GSG1LQ6UXU4 331 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 LRRTM1Q86UE6 522 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 GABRG1Q8N1C3 465 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 INO80EQ8NBZ0 244 aaPredicted RBP12.08□□□□□ -0.47
GPC1-209ENST00000495100 OR10G3Q8NGC4 313 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 LIN37Q96GY3 246 aaPredicted RBP12.08□□□□□ -0.47
GPC1-209ENST00000495100 C4orf45Q96LM5 186 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 GNRHR2Q96P88 292 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 SDHAF2Q9NX18 166 aa12.08□□□□□ -0.47
GPC1-209ENST00000495100 TRAV1-2A0A0B4J238 106 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 FAM230AA0A1W2PPH8 454 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 SCRG1O75711 98 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 HRH1P35367 487 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 TMUB2Q71RG4 321 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 RNF144BQ7Z419 303 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 EID2Q8N6I1 236 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 OTOSQ8NHW6 89 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 ADAT1Q9BUB4 502 aaKnown RBP12.08□□□□□ -0.48
GPC1-209ENST00000495100 JAM3Q9BX67 310 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 WWTR1Q9GZV5 400 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 SLC39A1Q9NY26 324 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 MRPS18BQ9Y676 258 aaKnown RBP12.08□□□□□ -0.48
GPC1-209ENST00000495100 TMEM272A0A1B0GTI8 110 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 FADS1O60427 444 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 ACSM4P0C7M7 580 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 S100A11P31949 105 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 DLSTP36957 453 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 H2BFSP57053 126 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 RASGEF1BQ0VAM2 473 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 PXKQ7Z7A4 578 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 FAM181AQ8N9Y4 354 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 THAP6Q8TBB0 222 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 RBPMSQ93062 196 aaKnown RBP12.08□□□□□ -0.48
GPC1-209ENST00000495100 SAV1Q9H4B6 383 aaPredicted RBP12.08□□□□□ -0.48
GPC1-209ENST00000495100 HS3ST3A1Q9Y663 406 aa12.08□□□□□ -0.48
GPC1-209ENST00000495100 ACACAQ13085 2346 aa12.07□□□□□ -0.48
GPC1-209ENST00000495100 H3BMH7 237 aa12.07□□□□□ -0.48
GPC1-209ENST00000495100 NUDT21O43809 227 aaKnown RBP12.07□□□□□ -0.48
GPC1-209ENST00000495100 UPK3AO75631 287 aa12.07□□□□□ -0.48
GPC1-209ENST00000495100 RAB40ALP0C0E4 278 aa12.07□□□□□ -0.48
GPC1-209ENST00000495100 SEC61A1P61619 476 aaKnown RBP12.07□□□□□ -0.48
GPC1-209ENST00000495100 EBPQ15125 230 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms