RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SOCS2O14508 198 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 TNFSF4P23510 183 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 FXYD6P3P58550 94 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 USP43Q70EL4 1123 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 CMBLQ96DG6 245 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 DHRS1Q96LJ7 313 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 SAMD8Q96LT4 415 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 RERGLQ9H628 205 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 SPAG4Q9NPE6 437 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 KRCC1Q9NPI7 259 aaPredicted RBP14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 DCAF13Q9NV06 445 aaKnown RBP14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 UBAP1Q9NZ09 502 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 ASH2LQ9UBL3 628 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 ATPIF1Q9UII2 106 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 PCDHB10Q9UN67 800 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 SAMD4AQ9UPU9 718 aaKnown RBP14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 AURKCQ9UQB9 309 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 STARD10Q9Y365 291 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 IER3IP1Q9Y5U9 82 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 DYSFO75923 2080 aa14.01□□□□□ -0.17
CCDC28B-204ENST00000469003 TRBV4-1A0A0J9YWV2 114 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 J3QW42 95 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 IMPA2O14732 288 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 TXNDC12O95881 172 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 IGHV2-70P01814 119 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 TNFRSF1AP19438 455 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 PRDX6P30041 224 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 RPS6KA3P51812 740 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 HILS1P60008 231 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 SEC23BQ15437 767 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 KCNMB1Q16558 191 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 CCDC92Q53HC0 331 aaPredicted RBP14□□□□□ -0.17
CCDC28B-204ENST00000469003 DPY19L2P2Q6ZN68 376 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 Q6ZR03 302 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 PTCHD4Q6ZW05 846 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 ZNF771Q7L3S4 317 aaPredicted RBP14□□□□□ -0.17
CCDC28B-204ENST00000469003 OR2Z1Q8NG97 314 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 OR1F12Q8NHA8 337 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 ST7LQ8TDW4 575 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 SLC7A6Q92536 515 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 PTP4A1Q93096 173 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 HAVCR1Q96D42 359 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 DCLRE1CQ96SD1 692 aaKnown RBP14□□□□□ -0.17
CCDC28B-204ENST00000469003 ELAC2Q9BQ52 826 aaKnown RBP14□□□□□ -0.17
CCDC28B-204ENST00000469003 FUZQ9BT04 418 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 TMEM106BQ9NUM4 274 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 DCAF16Q9NXF7 216 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 IL20RAQ9UHF4 553 aa14□□□□□ -0.17
CCDC28B-204ENST00000469003 UNC119BA6NIH7 251 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 GMNNO75496 209 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 FOXH1O75593 365 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 RGS9O75916 674 aaPredicted RBP13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 DIRAS1O95057 198 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 CDKN2AP42771 156 aaKnown RBP13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 RGS6P49758 472 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 LCN2P80188 198 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 KRT72Q14CN4 511 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 OTPQ5XKR4 325 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 C1orf94Q6P1W5 598 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 PGM2L1Q6PCE3 622 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 SMARCD3Q6STE5 483 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 C12orf54Q6X4T0 127 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 ZNF283Q8N7M2 679 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 FAM86B1Q8N7N1 296 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 NANPQ8TBE9 248 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 JMJD8Q96S16 334 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 NUAK2Q9H093 628 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 C7orf69Q9H7B7 122 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 ADA2Q9NZK5 511 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 IL19Q9UHD0 177 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 WNK2Q9Y3S1 2297 aa13.99□□□□□ -0.17
CCDC28B-204ENST00000469003 PPIAL4EA0A075B759 164 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 PPIAL4CA0A0B4J2A2 164 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 PPIAL4DF5H284 164 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 RER1O15258 196 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 SURF4O15260 269 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 SBK2P0C263 348 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 PPIAL4FP0DN26 164 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 RAC2P15153 192 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 ADRA2CP18825 462 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 CRABP1P29762 137 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 HNRNPA0Q13151 305 aaKnown RBP13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 TMEM155Q4W5P6 130 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 DNM1P34Q6PK57 102 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 SPICQ8N5J4 248 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 OR52J3Q8NH60 311 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 ITLN1Q8WWA0 313 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 GPA33Q99795 319 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 SUCNR1Q9BXA5 334 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 GORASP2Q9H8Y8 452 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 OPN4Q9UHM6 478 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 POLR1DQ9Y2S0 133 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 ARHGAP32A7KAX9 2087 aa13.98□□□□□ -0.17
CCDC28B-204ENST00000469003 TRIM77I1YAP6 450 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 FSHBP01225 129 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 DBHP09172 617 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 ZFP36P26651 326 aaKnown RBP13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 ERFP50548 548 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 SMIM11AP58511 58 aa13.97□□□□□ -0.17
CCDC28B-204ENST00000469003 ACTG1P63261 375 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms