RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 RAMP1O60894 148 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 RPP14O95059 124 aaKnown RBP13.37□□□□□ -0.27
SCAF11-204ENST00000395454 SRMP19623 302 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 NPR2P20594 1047 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 BCAP31P51572 246 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 PSMD7P51665 324 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 GTF3C1Q12789 2109 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 KCNMB1Q16558 191 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 SLC25A35Q3KQZ1 300 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 KRTCAP3Q53RY4 240 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 SLC25A47Q6Q0C1 308 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 LRRN1Q6UXK5 716 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 UBQLNLQ8IYU4 475 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 POC5Q8NA72 575 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 CMTM3Q96MX0 182 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 POLE4Q9NR33 117 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 SPRR3Q9UBC9 169 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 LINC01387J3KSC0 135 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 PFDN1O60925 122 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 MPZL1O95297 269 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 CSF3P09919 207 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 ZNF43P17038 809 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 ATF1P18846 271 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 ELK1P19419 428 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 CSNK2A1P68400 391 aaPredicted RBP13.37□□□□□ -0.27
SCAF11-204ENST00000395454 EIF2B1Q14232 305 aaKnown RBP13.37□□□□□ -0.27
SCAF11-204ENST00000395454 WDR38Q5JTN6 314 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 TMEM225Q6GV28 225 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 RHOUQ7L0Q8 258 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 IL17RDQ8NFM7 739 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 RNF133Q8WVZ7 376 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 MCHR2Q969V1 340 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 GFI1Q99684 422 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 KCNJ15Q99712 375 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 SLX1AQ9BQ83 275 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 EMC6Q9BV81 110 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 COMMD4Q9H0A8 199 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 PLSCR2Q9NRY7 297 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 C14orf119Q9NWQ9 140 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 CYB5R1Q9UHQ9 305 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 NBASA2RRP1 2371 aa13.37□□□□□ -0.27
SCAF11-204ENST00000395454 CHD6Q8TD26 2715 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 NPIPA2E9PIF3 369 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 NPIPA3F8WFD2 350 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 PDCD5O14737 125 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 WNT11O96014 354 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 ACTL6AO96019 429 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 NR2C1P13056 603 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 ZNF823P16415 610 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 DCTDP32321 178 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 TDGF1P3P51864 188 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 RIDAP52758 137 aaKnown RBP13.36□□□□□ -0.27
SCAF11-204ENST00000395454 SRYQ05066 204 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 ASAH1Q13510 395 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 CATSPERDQ86XM0 798 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 GPR148Q8TDV2 347 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 FOXN4Q96NZ1 517 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 B3GAT2Q9NPZ5 323 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 LRP12Q9Y561 859 aa13.36□□□□□ -0.27
SCAF11-204ENST00000395454 A0A1B0GVC2 190 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 A0A1W2PQ09 198 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 ACOD1A6NK06 481 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 H0YC42 278 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 AQP7O14520 342 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 TMCC2O75069 709 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 PNPP00491 289 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 APOA1P02647 267 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 KLK2P20151 261 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 LAP3P28838 519 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 LHX2P50458 406 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 CLDN20P56880 219 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 SCN1BQ07699 218 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 GDPD3Q7L5L3 318 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 KRT77Q7Z794 578 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 MRI1Q9BV20 369 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 PHF3Q92576 2039 aaKnown RBP13.35□□□□□ -0.27
SCAF11-204ENST00000395454 A0A0J9YW62 118 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 AIPO00170 330 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 EIF1AYO14602 144 aaKnown RBP13.35□□□□□ -0.27
SCAF11-204ENST00000395454 PRB1P04280 392 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 AZGP1P25311 298 aaKnown RBP13.35□□□□□ -0.27
SCAF11-204ENST00000395454 SUCLG1P53597 346 aaKnown RBP13.35□□□□□ -0.27
SCAF11-204ENST00000395454 CLRN1P58418 232 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 C3AR1Q16581 482 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 ZNF544Q6NX49 715 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 FOXL2NBQ6ZUU3 175 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 GPAT4Q86UL3 456 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 GGNQ86UU5 652 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 OR8H2Q8N162 312 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 TRMT10AQ8TBZ6 339 aaKnown RBP13.35□□□□□ -0.27
SCAF11-204ENST00000395454 C11orf40Q8WZ69 217 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 SARAFQ96BY9 339 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 ADGRG7Q96K78 797 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 NAA11Q9BSU3 229 aaPredicted RBP13.35□□□□□ -0.27
SCAF11-204ENST00000395454 SF3B5Q9BWJ5 86 aaKnown RBP13.35□□□□□ -0.27
SCAF11-204ENST00000395454 TIGARQ9NQ88 270 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 R4GMQ9 66 aa13.35□□□□□ -0.27
SCAF11-204ENST00000395454 FAM208BQ5VWN6 2430 aa13.34□□□□□ -0.27
SCAF11-204ENST00000395454 A0A1W2PPK0 400 aa13.34□□□□□ -0.27
SCAF11-204ENST00000395454 IFITM5A6NNB3 132 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms