RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 RNF7Q9UBF6 113 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SLC7A8Q9UHI5 535 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 FAM181BA6NEQ2 426 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SCG5P05408 212 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SLC2A2P11168 524 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 ARSBP15848 533 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 RPA2P15927 270 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 RBP2P50120 134 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 DUSP5Q16690 384 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 RNASE10Q5GAN6 216 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 FAM74A1Q5RGS3 127 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 PRAMEF5Q5TYX0 476 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 PRAMEF6Q5VXH4 476 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SLC16A11Q8NCK7 471 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 FAM57AQ8TBR7 257 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SECTM1Q8WVN6 248 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SPACA1Q9HBV2 294 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 DUSP22Q9NRW4 184 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 CXorf51AA0A1B0GTR3 108 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SPINT1O43278 529 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 TUBG1P23258 451 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 ELF3P78545 371 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SHBQ15464 509 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 GAB4Q2WGN9 574 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 PCGF3Q3KNV8 242 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF385BQ569K4 471 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 ZBTB37Q5TC79 503 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 TIFABQ6ZNK6 161 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 ZBTB46Q86UZ6 589 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 WFDC3Q8IUB2 231 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 SGPP2Q8IWX5 399 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 RDH5Q92781 318 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 GPR61Q9BZJ8 451 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 S100A14Q9HCY8 104 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 IGSF5Q9NSI5 407 aa8.29□□□□□ -1.08
LIMCH1-202ENST00000381753 IGKV3-7A0A075B6H7 116 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 PPIAL4EA0A075B759 164 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 PPIAL4DF5H284 164 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 GPR37O15354 613 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 SULT1C4O75897 302 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 PPIAL4FP0DN26 164 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 HAAOP46952 286 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 NPY4RP50391 375 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 P2RY6Q15077 328 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 HEPHL1Q6MZM0 1159 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 IQCF1Q8N6M8 205 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 TMEM99Q8N816 258 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 ZBTB44Q8NCP5 570 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 NEIL3Q8TAT5 605 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 RNF128Q8TEB7 428 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 MED29Q9NX70 200 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 PPIAL4AQ9Y536 164 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 ENPP4Q9Y6X5 453 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 MYH4Q9Y623 1939 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 A0A1W2PR48 441 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 DENRO43583 198 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 TFPTP0C1Z6 253 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 CCL3P10147 92 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 C21orf58P58505 322 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 TMEM251Q8N6I4 163 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 OR10J5Q8NHC4 309 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 ZPLD1Q8TCW7 415 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 SMAP2Q8WU79 429 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 L3HYPDHQ96EM0 354 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF764Q96H86 408 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 PCDHAC1Q9H158 963 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 PLPP1O14494 284 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 NRASP01111 189 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 GIFP27352 417 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 CDKN1AP38936 164 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 RPL23AP62750 156 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 CCL8P80075 99 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 AADACL4Q5VUY2 407 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 IGDCC3Q8IVU1 814 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 A0A1W2PPV4 95 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 CDC20BQ86Y33 519 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 RNF113BQ8IZP6 322 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 TMEM104Q8NE00 496 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 OR8J1Q8NGP2 316 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 C8orf46Q8TAG6 207 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 FAM222BQ8WU58 562 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 TRUB1Q8WWH5 349 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 TNFRSF13CQ96RJ3 184 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 BARD1Q99728 777 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 PKP2Q99959 881 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 F5P12259 2224 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 ZNF99A8MXY4 864 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 PRKACGP22612 351 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 MAP2K6P52564 334 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 WDR4P57081 412 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 CLEC12BQ2HXU8 276 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 PAQR6Q6TCH4 344 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 FAM214BQ7L5A3 538 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 OR2A1Q8NGT9 310 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 NDFIP1Q9BT67 221 aa8.28□□□□□ -1.08
LIMCH1-202ENST00000381753 KNTC1P50748 2209 aa8.27□□□□□ -1.08
LIMCH1-202ENST00000381753 FXYD6-FXYD2A0A087WZ82 144 aa8.27□□□□□ -1.08
LIMCH1-202ENST00000381753 METTL15A6NJ78 407 aa8.27□□□□□ -1.08
LIMCH1-202ENST00000381753 AQP12BA6NM10 295 aa8.27□□□□□ -1.08
LIMCH1-202ENST00000381753 CA6P23280 308 aa8.27□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms