RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 SAXO2Q658L1 398 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 MRPS24Q96EL2 167 aaKnown RBP14.18□□□□□ -0.14
PTPRF-201ENST00000359947 PLEKHF2Q9H8W4 249 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 RNF150Q9ULK6 438 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 DNAJC13O75165 2243 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 F5P12259 2224 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 SH2D7A6NKC9 451 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-201ENST00000359947 PPIHO43447 177 aaKnown RBP14.18□□□□□ -0.14
PTPRF-201ENST00000359947 HLA-DOBP13765 273 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 CD300LGQ6UXG3 332 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 TMEM38AQ9H6F2 299 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 SERGEFQ9UGK8 458 aa14.18□□□□□ -0.14
PTPRF-201ENST00000359947 FCMRO60667 390 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 ARNTP27540 789 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 HAAOP46952 286 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 DLX5P56178 289 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 TATDN3Q17R31 274 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 STEAP1BQ6NZ63 245 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 LYPD8Q6UX82 237 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 OR2Z1Q8NG97 314 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 OR51A4Q8NGJ6 313 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 OR51A2Q8NGJ7 313 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 ARV1Q9H2C2 271 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF705GA8MUZ8 300 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-201ENST00000359947 SLC16A6O15403 523 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 UBE2G2P60604 165 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 RPL18Q07020 188 aaKnown RBP14.17□□□□□ -0.14
PTPRF-201ENST00000359947 LAT2Q9GZY6 243 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 TAS2R5Q9NYW4 299 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 ING1Q9UK53 422 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-201ENST00000359947 TRAF3IP2O43734 574 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-201ENST00000359947 FKBP2P26885 142 aaKnown RBP14.17□□□□□ -0.14
PTPRF-201ENST00000359947 OR1J1Q8NGS3 322 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 AKR7LQ8NHP1 331 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 POFUT1Q9H488 388 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 FBXL4Q9UKA2 621 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 POLDIP2Q9Y2S7 368 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 VAMP5O95183 116 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 RTL8BQ17RB0 113 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 TMEM81Q6P7N7 255 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 OXGR1Q96P68 337 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 GNRHR2Q96P88 292 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 PDFQ9HBH1 243 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 GPR84Q9NQS5 396 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 LOC107986453A0A1B0GWG9 222 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 GLAP06280 429 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 TBCEQ15813 527 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-201ENST00000359947 OR1S2Q8NGQ3 325 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 SMCHD1A6NHR9 2005 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 PAPLNO95428 1278 aa14.17□□□□□ -0.14
PTPRF-201ENST00000359947 SUB1P53999 127 aaKnown RBP eCLIP14.17□□□□□ -0.14
PTPRF-201ENST00000359947 CCR6P51684 374 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF385BQ569K4 471 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 KDM4DQ6B0I6 523 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 NAA40Q86UY6 237 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 NAA50Q9GZZ1 169 aaKnown RBP14.16□□□□□ -0.14
PTPRF-201ENST00000359947 WNT16Q9UBV4 365 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 SEMG1P04279 462 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 MOB3BQ86TA1 216 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 NOXA1Q86UR1 476 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 FBXW5Q969U6 566 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 TXN2Q99757 166 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 P4HTMQ9NXG6 502 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 PPM1DO15297 605 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 CBR3O75828 277 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 CTGFP29279 349 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 BCO1Q9HAY6 547 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 HNF1AP20823 631 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 SDHBP21912 280 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 MEOX1P50221 254 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 KCNIP4Q6PIL6 250 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 Q6ZNB5 142 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 NT5DC2Q9H857 520 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 TIAM2Q8IVF5 1701 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 FOXF1Q12946 379 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 GPR37O15354 613 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 SLC35D3Q5M8T2 416 aa14.16□□□□□ -0.14
PTPRF-201ENST00000359947 PARP12Q9H0J9 701 aaKnown RBP14.16□□□□□ -0.14
PTPRF-201ENST00000359947 PURGQ9UJV8 347 aaKnown RBP14.16□□□□□ -0.14
PTPRF-201ENST00000359947 OPRM1P35372 400 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 MAVSQ7Z434 540 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 PTRH1Q86Y79 214 aaKnown RBP14.15□□□□□ -0.14
PTPRF-201ENST00000359947 NKAIN3Q8N8D7 197 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 DTWD2Q8NBA8 298 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 ASB1Q9Y576 335 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF638Q14966 1978 aaKnown RBP14.15□□□□□ -0.14
PTPRF-201ENST00000359947 B4GALT3O60512 393 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 LAP3P28838 519 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 LIPNQ5VXI9 398 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 TMEM92Q6UXU6 159 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 OR10AD1Q8NGE0 317 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 POMT2Q9UKY4 750 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 SOD1P00441 154 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 C2orf76Q3KRA6 126 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 SYT14P1Q58G82 188 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 TFAP2EQ6VUC0 442 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 Q6ZRG5 221 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 CAMKMTQ7Z624 323 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 PLPP5Q8NEB5 264 aa14.15□□□□□ -0.14
PTPRF-201ENST00000359947 OPALINQ96PE5 141 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms