RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CELA3AP09093 270 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 PIRTP0C851 137 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 SNRPBP14678 240 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 ZNF14P17017 642 aaPredicted RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 GCH1P30793 250 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 MAGEB1P43366 347 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 PCBP4P57723 403 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 NFATC4Q14934 902 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 MST1LQ2TV78 715 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 SLC35D3Q5M8T2 416 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 FIGNL1Q6PIW4 674 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CD163Q86VB7 1156 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 TRAPPC5Q8IUR0 188 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 WDR89Q96FK6 387 aaPredicted RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 MED8Q96G25 268 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 PEX11GQ96HA9 241 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 HSPA12BQ96MM6 686 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 YPEL4Q96NS1 127 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 STACQ99469 402 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 GPA33Q99795 319 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 HINT3Q9NQE9 182 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 CMC2Q9NRP2 79 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ASF1BQ9NVP2 202 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 AHSPQ9NZD4 102 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 DNAJB11Q9UBS4 358 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CACFD1Q9UGQ2 172 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 KCNE5Q9UJ90 142 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CRLS1Q9UJA2 301 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CYP8B1Q9UNU6 501 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 WASF3Q9UPY6 502 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 KCNIP3Q9Y2W7 256 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 U3KQA8 63 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 TRPM6Q9BX84 2022 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 A0A087WUJ7 227 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 TVP23AA6NH52 213 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 H7C1Q1 480 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 OPN1LWP04000 364 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CSRP1P21291 193 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 G0S2P27469 103 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 S100A2P29034 98 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 DLSTP36957 453 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 GPR4P46093 362 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 TAS2R19P59542 299 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 TAS2R20P59543 309 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 RAP1AP62834 184 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 FZD2Q14332 565 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 RNASE10Q5GAN6 216 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 TMEM69Q5SWH9 247 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 LIPNQ5VXI9 398 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ETV3LQ6ZN32 361 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ZDHHC22Q8N966 263 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 OR13C2Q8NGS9 318 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 SMPDL3AQ92484 453 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 FAM122AQ96E09 287 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ZFYVE21Q9BQ24 234 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ZNF471Q9BX82 626 aaPredicted RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 NMES1Q9C002 83 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 RERGLQ9H628 205 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 TMEM185BQ9H7F4 350 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 CXorf36Q9H7Y0 433 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 ISG20L2Q9H9L3 353 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 ZFYVE1Q9HBF4 777 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 TMEM74BQ9NUR3 256 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 DLL3Q9NYJ7 618 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 SEMA5BQ9P283 1151 aa4.76□□□□□ -1.65
USP28-213ENST00000544967 DHCR7Q9UBM7 475 aaKnown RBP4.76□□□□□ -1.65
USP28-213ENST00000544967 RALGAPA1Q6GYQ0 2036 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 GNG14A0A1W2PPG7 69 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 TMEM72A0PK05 275 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 AIFM1O95831 613 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 ITGA5P08648 1049 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 OR2T7P0C7T2 308 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 LINC00614P0C842 121 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 MAOAP21397 527 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 ACHEP22303 614 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 CRABP1P29762 137 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 DDTP30046 118 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 AKT2P31751 481 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 MPLP40238 635 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 CDKN1BP46527 198 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 CX3CR1P49238 355 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 CCR4P51679 360 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 NUTF2P61970 127 aaKnown RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 RPS11P62280 158 aaKnown RBP eCLIP4.75□□□□□ -1.65
USP28-213ENST00000544967 ZNF85Q03923 595 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 MADCAM1Q13477 382 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 DCAF12L2Q5VW00 463 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 ZNF385CQ66K41 422 aaPredicted RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 TMEM71Q6P5X7 295 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 ZNF613Q6PF04 617 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 ARL9Q6T311 187 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 SLCO4C1Q6ZQN7 724 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 ASCL5Q7RTU5 278 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 COMMD6Q7Z4G1 85 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 SLC35F3Q8IY50 421 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 GALNT16Q8N428 558 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 PAQR4Q8N4S7 273 aaPredicted RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 FRMD1Q8N878 549 aa4.75□□□□□ -1.65
USP28-213ENST00000544967 INO80EQ8NBZ0 244 aaPredicted RBP4.75□□□□□ -1.65
USP28-213ENST00000544967 OR2T27Q8NH04 317 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms