RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 UBE2IP63279 158 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 MC2RQ01718 297 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 GLT8D1Q68CQ7 371 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 ETV3LQ6ZN32 361 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 PDZD9Q8IXQ8 264 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 POMGNT2Q8NAT1 580 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 OR10R2Q8NGX6 335 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 ZNF417Q8TAU3 575 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 GPR148Q8TDV2 347 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 HAVCR1Q96D42 359 aa7.8□□□□□ -1.16
USP40-203ENST00000427112 ZNF587Q96SQ5 575 aaPredicted RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 USB1Q9BQ65 265 aaKnown RBP7.8□□□□□ -1.16
USP40-203ENST00000427112 NUP210Q8TEM1 1887 aaPredicted RBP7.79□□□□□ -1.16
USP40-203ENST00000427112 IGKV1D-43A0A0B4J1Z2 117 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 PLSCR5A0PG75 271 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 CPED1A4D0V7 1026 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 FBXO24O75426 580 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 ADAP1O75689 374 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 GLSO94925 669 aaPredicted RBP7.79□□□□□ -1.16
USP40-203ENST00000427112 NKX2-2O95096 273 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 SEMA4FO95754 770 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 KNG1P01042 644 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 TACSTD2P09758 323 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 IFNGR1P15260 489 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 CTHP32929 405 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 ASCL1P50553 236 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 GPR143P51810 404 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 DEFA6Q01524 100 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 CHAF1BQ13112 559 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 SHHQ15465 462 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 BATFQ16520 125 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 ZNF74Q16587 644 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 DPY19L2P2Q6ZN68 376 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 SLC16A13Q7RTY0 426 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 ZNF550Q7Z398 422 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 DCXRQ7Z4W1 244 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 SEMA6DQ8NFY4 1073 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 OR1J4Q8NGS1 313 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 TMED6Q8WW62 240 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 SLC41A2Q96JW4 573 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 NICN1Q9BSH3 213 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 ST6GALNAC5Q9BVH7 336 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 HRH4Q9H3N8 390 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 MMP25Q9NPA2 562 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 PRODH2Q9UF12 536 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 SHANK1Q9Y566 2161 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 TRBV23-1A0A0A0MS06 115 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 TRAV1-2A0A0B4J238 106 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 OR4C45A6NMZ5 311 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 NDUFB6O95139 128 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 SCGB1D2O95969 90 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 CYB5AP00167 134 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 OR4E1P0C645 316 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 SLC35E2P0CK97 266 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 KLK2P20151 261 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 NUDT1P36639 197 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 DLSTP36957 453 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 SNU13P55769 128 aaKnown RBP7.79□□□□□ -1.16
USP40-203ENST00000427112 POU3F1Q03052 451 aaPredicted RBP7.79□□□□□ -1.16
USP40-203ENST00000427112 ZNF117Q03924 483 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 ZNF660Q6AZW8 331 aaPredicted RBP7.79□□□□□ -1.16
USP40-203ENST00000427112 OVCH1Q7RTY7 1134 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 CMIPQ8IY22 773 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 GABRG1Q8N1C3 465 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 C12orf45Q8N5I9 185 aaPredicted RBP7.79□□□□□ -1.16
USP40-203ENST00000427112 BPIFCQ8NFQ6 507 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 PPP1R1CQ8WVI7 109 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 C8orf44Q96CB5 159 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 TMEM41AQ96HV5 264 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 C20orf24Q9BUV8 137 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 UNKLQ9H9P5 680 aaKnown RBP7.79□□□□□ -1.16
USP40-203ENST00000427112 COMMD9Q9P000 198 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 DENND4AQ7Z401 1863 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 KIAA2026Q5HYC2 2103 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 FAM221AA4D161 298 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 TMEM200CA6NKL6 621 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 TMEM150CB9EJG8 249 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 GDF9O60383 454 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 TNFP01375 233 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 HOXB5P09067 269 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 ABOP16442 354 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 IGFBP4P22692 258 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 CD34P28906 385 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 PSMD4P55036 377 aaKnown RBP7.79□□□□□ -1.16
USP40-203ENST00000427112 DLX5P56178 289 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 RBMS2Q15434 407 aaKnown RBP7.79□□□□□ -1.16
USP40-203ENST00000427112 ZNF626Q68DY1 528 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 DPPA2Q7Z7J5 298 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 OR4D6Q8NGJ1 314 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 MIB2Q96AX9 1013 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 LURAP1Q96LR2 239 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 GPER1Q99527 375 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 DPYSL5Q9BPU6 564 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 TAS2R5Q9NYW4 299 aa7.79□□□□□ -1.16
USP40-203ENST00000427112 FER1L5A0AVI2 2057 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 A0A1W2PNR3 127 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 SHOXO15266 292 aa7.78□□□□□ -1.16
USP40-203ENST00000427112 ZNF264O43296 627 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms