RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZNF32P17041 273 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 TNFRSF1AP19438 455 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 MSR1P21757 451 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 RPL4P36578 427 aaKnown RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 MAGEB1P43366 347 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 OR1E2P47887 323 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 CRYBA2P53672 197 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 CTXN1P60606 82 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 PSG4Q00888 419 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 PRKCDQ05655 676 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 RUNX1T1Q06455 604 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 SCRN3Q0VDG4 424 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 TSTQ16762 297 aaKnown RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 MSMPQ1L6U9 139 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 LRRC23Q53EV4 343 aaPredicted RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 DCAF12L2Q5VW00 463 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 SLC25A47Q6Q0C1 308 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 USP51Q70EK9 711 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 FKBP9P1Q75LS8 142 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 MEX3DQ86XN8 651 aaKnown RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 WDFY1Q8IWB7 410 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 MICU2Q8IYU8 434 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 OFCC1Q8IZS5 231 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 PAQR4Q8N4S7 273 aaPredicted RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 FAM156AQ8NDB6 213 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 OR5L1Q8NGL2 311 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 PFN4Q8NHR9 129 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 KLF14Q8TD94 323 aaPredicted RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 ST7LQ8TDW4 575 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 FAM216AQ8WUB2 273 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 GEMIN6Q8WXD5 167 aaKnown RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 ACOT11Q8WXI4 607 aaPredicted RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 CCL17Q92583 94 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 NSMAFQ92636 917 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 YIPF5Q969M3 257 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 ZMYND19Q96E35 227 aaPredicted RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 MARS2Q96GW9 593 aaKnown RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 C4orf45Q96LM5 186 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 RBM4Q9BWF3 364 aaKnown RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 SUCNR1Q9BXA5 334 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 OR2H1Q9GZK4 316 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 OR51B6Q9H340 312 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 NARFLQ9H6Q4 476 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 EFCAB1Q9HAE3 211 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 NTN4Q9HB63 628 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 SAR1AQ9NR31 198 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 C20orf141Q9NUB4 165 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 TBCCD1Q9NVR7 557 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 TMEM5Q9Y2B1 443 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 FAM32AQ9Y421 112 aaKnown RBP6.03□□□□□ -1.44
VPS41-208ENST00000448833 CAPN7Q9Y6W3 813 aa6.03□□□□□ -1.44
VPS41-208ENST00000448833 FAM157AC9JC47 383 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 FXYD1O00168 92 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 PLPP2O43688 288 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 FOXH1O75593 365 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 NCR1O76036 304 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 SLC2A10O95528 541 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 ABHD16AO95870 558 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 CD55P08174 381 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 H2AFXP16104 143 aaPredicted RBP6.02□□□□□ -1.45
VPS41-208ENST00000448833 ITGA2P17301 1181 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 LAP3P28838 519 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 CDAP32320 146 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 RGS6P49758 472 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 MMP15P51511 669 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 PPP1CBP62140 327 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 ERVK-25P63136 954 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 MVKQ03426 396 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 ALKBH6Q3KRA9 238 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 ZBED5Q49AG3 693 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 IFI44LQ53G44 452 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 HSP90B2PQ58FF3 399 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 GPR139Q6DWJ6 353 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 SLC27A4Q6P1M0 643 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 PGM2L1Q6PCE3 622 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 RBMS3Q6XE24 437 aaKnown RBP6.02□□□□□ -1.45
VPS41-208ENST00000448833 ZNF730Q6ZMV8 503 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 FOXL2NBQ6ZUU3 175 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 TMPRSS11FQ6ZWK6 438 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 MBOAT2Q6ZWT7 520 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 TSPYL5Q86VY4 417 aaPredicted RBP6.02□□□□□ -1.45
VPS41-208ENST00000448833 LSRQ86X29 649 aaPredicted RBP6.02□□□□□ -1.45
VPS41-208ENST00000448833 BPIFB2Q8N4F0 458 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 KLHL36Q8N4N3 616 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 SPICQ8N5J4 248 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 OR51A7Q8NH64 312 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 MOSPD2Q8NHP6 518 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 ABHD4Q8TB40 342 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 SLC25A40Q8TBP6 338 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 HDAC2Q92769 488 aaKnown RBP6.02□□□□□ -1.45
VPS41-208ENST00000448833 NABP1Q96AH0 204 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 NMD3Q96D46 503 aaKnown RBP6.02□□□□□ -1.45
VPS41-208ENST00000448833 DCLRE1CQ96SD1 692 aaKnown RBP6.02□□□□□ -1.45
VPS41-208ENST00000448833 GAL3ST1Q99999 423 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 OR2J1Q9GZK6 312 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 KLHL21Q9UJP4 597 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 RPS6KA6Q9UK32 745 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 A4GNTQ9UNA3 340 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 WIPI2Q9Y4P8 454 aa6.02□□□□□ -1.45
VPS41-208ENST00000448833 UGT2A1Q9Y4X1 527 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 198.8 ms