RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 PTCHD4Q6ZW05 846 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 HIPK1Q86Z02 1210 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 ICA1LQ8NDH6 482 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 ZNF540Q8NDQ6 660 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 OR1J1Q8NGS3 322 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 SYNPRQ8TBG9 265 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 C11orf40Q8WZ69 217 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 MCUR1Q96AQ8 359 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 BCL2L14Q9BZR8 327 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 TAAR3PQ9P1P4 343 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 IER3IP1Q9Y5U9 82 aa15.74■□□□□ 0.11
CLN3-202ENST00000355477 LRP5LA4QPB2 252 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 T-ENOLP0DO92 83 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 ATP6V1B2P21281 511 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 COL8A2P25067 703 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 RRM2P31350 389 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 CDKN2AP42771 156 aaKnown RBP15.73■□□□□ 0.11
CLN3-202ENST00000355477 GDI2P50395 445 aaKnown RBP15.73■□□□□ 0.11
CLN3-202ENST00000355477 KLF3P57682 345 aaPredicted RBP15.73■□□□□ 0.11
CLN3-202ENST00000355477 GPR139Q6DWJ6 353 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 SMARCD3Q6STE5 483 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 DPY19L2P2Q6ZN68 376 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 RINLQ6ZS11 566 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 ZDHHC21Q8IVQ6 265 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 NDEL1Q9GZM8 345 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 SYT4Q9H2B2 425 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 KRCC1Q9NPI7 259 aaPredicted RBP15.73■□□□□ 0.11
CLN3-202ENST00000355477 VSX1Q9NZR4 365 aaPredicted RBP15.73■□□□□ 0.11
CLN3-202ENST00000355477 ACTR3BQ9P1U1 418 aa15.73■□□□□ 0.11
CLN3-202ENST00000355477 C12orf71A8MTZ7 269 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 SLC16A7O60669 478 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 LILRA1O75019 489 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 NCR1O76036 304 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 MPZL1O95297 269 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 TXNDC12O95881 172 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 APEHP13798 732 aaKnown RBP15.72■□□□□ 0.11
CLN3-202ENST00000355477 ZNF16P17020 682 aaPredicted RBP15.72■□□□□ 0.11
CLN3-202ENST00000355477 ZNF23P17027 643 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 PCBD1P61457 104 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 TRIP10Q15642 601 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 NKPD1Q17RQ9 610 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 TMEM255AQ5JRV8 349 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 SYT9Q86SS6 491 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 ALDH16A1Q8IZ83 802 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 CCDC197Q8NCU1 140 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 GTF3AQ92664 365 aaKnown RBP15.72■□□□□ 0.11
CLN3-202ENST00000355477 MSI2Q96DH6 328 aaKnown RBP15.72■□□□□ 0.11
CLN3-202ENST00000355477 SOX7Q9BT81 388 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 RERGLQ9H628 205 aa15.72■□□□□ 0.11
CLN3-202ENST00000355477 COA3Q9Y2R0 106 aaPredicted RBP15.72■□□□□ 0.11
CLN3-202ENST00000355477 OR10H3O60404 316 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 PPP1R3DO95685 299 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 NGFP01138 241 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 TACSTD2P09758 323 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 IL2RGP31785 369 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 MAGEB1P43366 347 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 SELENOVP59797 346 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 DBPQ10586 325 aaPredicted RBP15.71■□□□□ 0.11
CLN3-202ENST00000355477 RFX4Q33E94 735 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 SPATA46Q5T0L3 261 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 FANK1Q8TC84 345 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 YIPF5Q969M3 257 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 MARS2Q96GW9 593 aaKnown RBP15.71■□□□□ 0.11
CLN3-202ENST00000355477 TSSK2Q96PF2 358 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 NUAK2Q9H093 628 aa15.71■□□□□ 0.11
CLN3-202ENST00000355477 HINT3Q9NQE9 182 aaKnown RBP15.71■□□□□ 0.11
CLN3-202ENST00000355477 EIF3KQ9UBQ5 218 aaKnown RBP15.71■□□□□ 0.11
CLN3-202ENST00000355477 TCRBV5S2A0A599 114 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 C17orf100A8MU93 164 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 DCTN6O00399 190 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 KHDRBS3O75525 346 aaKnown RBP15.7■□□□□ 0.1
CLN3-202ENST00000355477 GPANK1O95872 356 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 IGHV3-13P01766 116 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 FPR3P25089 353 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 MPV17P39210 176 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 GSSP48637 474 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 GZMKP49863 264 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 RPS6KA3P51812 740 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 MS4A2Q01362 244 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 GLO1Q04760 184 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 C1orf94Q6P1W5 598 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 RFPL4BQ6ZWI9 263 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 ADCK1Q86TW2 530 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 SLC25A40Q8TBP6 338 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 RDH5Q92781 318 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 SAMD8Q96LT4 415 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 ERMAPQ96PL5 475 aaPredicted RBP15.7■□□□□ 0.1
CLN3-202ENST00000355477 OR2J1Q9GZK6 312 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 OR52D1Q9H346 318 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 SLCO1C1Q9NYB5 712 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 FAM53CQ9NYF3 392 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 TMCC3Q9ULS5 477 aa15.7■□□□□ 0.1
CLN3-202ENST00000355477 ICMTO60725 284 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 CALB2P22676 271 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 HMGA2P52926 109 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 PPP1CBP62140 327 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 ZNF718Q3SXZ3 478 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 PGBD2Q6P3X8 592 aa15.69■□□□□ 0.1
CLN3-202ENST00000355477 VASH1Q7L8A9 365 aaPredicted RBP15.69■□□□□ 0.1
CLN3-202ENST00000355477 GLB1L2Q8IW92 636 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms