RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 APOBEC1P41238 236 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 ELFN2Q5R3F8 820 aa16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 OLFML2AQ68BL7 652 aa16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 RALGAPA1Q6GYQ0 2036 aa16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 NLRC3Q7RTR2 1065 aa16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 MFSD8Q8NHS3 518 aa16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 SLC25A44Q96H78 314 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 CCDC74BQ96LY2 380 aa16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 ATG5Q9H1Y0 275 aa16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 PPP4R1LQ9P1A2 415 aa16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 SIT1Q9Y3P8 196 aa16.43■□□□□ 0.22
SHKBP1-201ENST00000291842 TMEM272A0A1B0GTI8 110 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 LDOC1O95751 146 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 SPOCK1Q08629 439 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 ANGPT1Q15389 498 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 NR0B2Q15466 257 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 GLYATL3Q5SZD4 288 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 LYSMD4Q5XG99 296 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 BPHLQ86WA6 291 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 NUBPLQ8TB37 319 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 DDIT4LQ96D03 193 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 KCNK17Q96T54 332 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 CRB3Q9BUF7 120 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 CHST11Q9NPF2 352 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 VSTM2BA6NLU5 285 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 SLC17A2O00624 439 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 TGM6O95932 706 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 BIDP55957 195 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 C5orf46Q6UWT4 87 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 CPEB2Q7Z5Q1 589 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 OR52B4Q8NGK2 314 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 OR13C3Q8NGS6 347 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 OR2I1PQ8NGU4 316 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 OR8S1Q8NH09 359 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 GPR137Q96N19 417 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 IRF2BPLQ9H1B7 796 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 DIABLOQ9NR28 239 aa16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 ZNF275Q9NSD4 429 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 EIF3KQ9UBQ5 218 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-201ENST00000291842 H7C417 338 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 TOX3O15405 576 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 FOSL2P15408 326 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 MNDAP41218 407 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 DAP3P51398 398 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 LGALSLQ3ZCW2 172 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 METTL11BQ5VVY1 283 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 OR4C16Q8NGL9 310 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 ST7LQ8TDW4 575 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 DVL3Q92997 716 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 METTL7AQ9H8H3 244 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 CA10Q9NS85 328 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 OCIAD1Q9NX40 245 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 MTFP1Q9UDX5 166 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 R4GMQ9 66 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 WDFY4Q6ZS81 3184 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 LOC100289279A0A1B0GTE1 492 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 A0A1B0GUH1 482 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 TMEM269A0A1B0GVZ9 245 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 LOC107986453A0A1B0GWG9 222 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 CIB4A0PJX0 185 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 A6NIZ1 184 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 PYCARD-AS1I3L0S3 204 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 ICMTO60725 284 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 SRSF10O75494 262 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 CD2P06729 351 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 ZNF41P51814 821 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 RAP1BP61224 184 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 RAP1AP62834 184 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 TMEM205Q6UW68 189 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 GLDNQ6ZMI3 551 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 ZNF454Q8N9F8 522 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 WDR89Q96FK6 387 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 SPSB2Q99619 263 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 MYOTQ9UBF9 498 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 CKLFQ9UBR5 152 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 OR52A1Q9UKL2 312 aa16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 MRPS18BQ9Y676 258 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-201ENST00000291842 A0A1B0GVI7 797 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 A0A1W2PPC1 479 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 LIPT2A6NK58 231 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 P2RY10O00398 339 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 NDUFB6O95139 128 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 PTGS2P35354 604 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 DNASE1L1P49184 302 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 ZNF81P51508 661 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 MAP2K6P52564 334 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 PER3P56645 1201 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 MYBPHQ13203 477 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 PHF19Q5T6S3 580 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 OR10K2Q6IF99 312 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 ZNF782Q6ZMW2 699 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 ZNF767PQ75MW2 155 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 C15orf40Q8WUR7 153 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 ZMAT3Q9HA38 289 aaKnown RBP16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 G6PC2Q9NQR9 355 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 MGAT4CQ9UBM8 478 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 SCP2D1Q9UJQ7 156 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 A0A1W2PNR3 127 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 G3V3Q6 166 aa16.4■□□□□ 0.22
SHKBP1-201ENST00000291842 PRAF2O60831 178 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms