RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 MARCH7Q9H992 704 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 NANSQ9NR45 359 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 SLC13A4Q9UKG4 626 aa17.05■□□□□ 0.32
SQSTM1-215ENST00000514093 M0R3H8 397 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 TIMM23O14925 209 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 TIMM8AO60220 97 aaPredicted RBP17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 TGDSO95455 350 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 SLC2A10O95528 541 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 PSG4Q00888 419 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 PAX2Q02962 417 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 MPP2Q14168 576 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 HHATQ5VTY9 493 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 MSANTD1Q6ZTZ1 278 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 RANBP3LQ86VV4 465 aaPredicted RBP17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 OR10S1Q8NGN2 331 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 UPRTQ96BW1 309 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 SIGLEC11Q96RL6 698 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 MCHR1Q99705 422 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 SIAEQ9HAT2 523 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 ZIM2Q9NZV7 527 aa17.04■□□□□ 0.32
SQSTM1-215ENST00000514093 CEACAM18A8MTB9 384 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 SRRM5B3KS81 715 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 HDAC3O15379 428 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 ZNF205O95201 554 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 HIST1H2ABP04908 130 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 WNT2P09544 360 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 UMPSP11172 480 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 HOXB9P17482 250 aaPredicted RBP17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 ERVK-25P63136 954 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 PSG7Q13046 419 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 CDK5R2Q13319 367 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 SGCAQ16586 387 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 MTX3Q5HYI7 312 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 SWT1Q5T5J6 900 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 BTNL3Q6UXE8 466 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 HIST3H2AQ7L7L0 130 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 POU5F2Q8N7G0 328 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 SMYD1Q8NB12 490 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 OR2Z1Q8NG97 314 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 HIST1H2ACQ93077 130 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 ZBTB9Q96C00 473 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 PAIP2Q9BPZ3 127 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 MRPL13Q9BYD1 178 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 CHIAQ9BZP6 476 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 SLC19A3Q9BZV2 496 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 NANOGQ9H9S0 305 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 SLC25A37Q9NYZ2 338 aa17.03■□□□□ 0.32
SQSTM1-215ENST00000514093 IGKV1D-43A0A0B4J1Z2 117 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 CLPSL1A2RUU4 121 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 TRPC5OSA6NMA1 111 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 CPSF4LA6NMK7 179 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 BLOC1S5-TXNDC5H3BN57 136 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 TRMUO75648 421 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 THY1P04216 161 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 F13BP05160 661 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 SELEP16581 610 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 ZMAT1Q5H9K5 638 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 LRRN1Q6UXK5 716 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 UNQ6126/PRO20091Q6UXV3 157 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 MSRB3Q8IXL7 192 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 NOXO1Q8NFA2 376 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 ITLN1Q8WWA0 313 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 NSMAFQ92636 917 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 NABP1Q96AH0 204 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 SAMD8Q96LT4 415 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 SSBP3Q9BWW4 388 aaPredicted RBP17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 SDR39U1Q9NRG7 319 aaPredicted RBP17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 SLAMF8Q9P0V8 285 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 CGGBP1Q9UFW8 167 aaPredicted RBP17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 UGT2A1Q9Y4X1 527 aa17.02■□□□□ 0.32
SQSTM1-215ENST00000514093 PRORSD1PA6NEY8 169 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 MCIDASD6RGH6 385 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 CHP2O43745 196 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 ALX3O95076 343 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 PPIAL4GP0DN37 164 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 THRBP10828 461 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 MDH2P40926 338 aaKnown RBP17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 SCARB2Q14108 478 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 TAF11Q15544 211 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 ZNF613Q6PF04 617 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 TTC33Q6PID6 262 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 Q6ZR03 302 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 ARMC8Q8IUR7 673 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 GOLGA6L1Q8N7Z2 621 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.01■□□□□ 0.313e-7■■■■■ 44.1
SQSTM1-215ENST00000514093 ZNF607Q96SK3 696 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 WNT5BQ9H1J7 359 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 POFUT1Q9H488 388 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 SLCO1B3Q9NPD5 702 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 IL20RAQ9UHF4 553 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 ZNF229Q9UJW7 825 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 PPP1R3CQ9UQK1 317 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 LRCH1Q9Y2L9 728 aa17.01■□□□□ 0.31
SQSTM1-215ENST00000514093 IGHV2-70DA0A0C4DH43 119 aa17■□□□□ 0.31
SQSTM1-215ENST00000514093 NDUFA7O95182 113 aa17■□□□□ 0.31
SQSTM1-215ENST00000514093 LYPD3O95274 346 aa17■□□□□ 0.31
SQSTM1-215ENST00000514093 TSPAN15O95858 294 aa17■□□□□ 0.31
SQSTM1-215ENST00000514093 ASAH2BP0C7U1 165 aa17■□□□□ 0.31
SQSTM1-215ENST00000514093 ACADSP16219 412 aa17■□□□□ 0.31
SQSTM1-215ENST00000514093 TNFRSF1AP19438 455 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms