RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 GNAI2P04899 355 aa21.25■□□□□ 0.99
CLN3-256ENST00000637107 OLFM4Q6UX06 510 aa21.25■□□□□ 0.99
CLN3-256ENST00000637107 PLEKHM2Q8IWE5 1019 aa21.25■□□□□ 0.99
CLN3-256ENST00000637107 RTL9Q8NET4 1388 aa21.24■□□□□ 0.99
CLN3-256ENST00000637107 C21orf2O43822 256 aa21.24■□□□□ 0.99
CLN3-256ENST00000637107 HMMRO75330 724 aa21.24■□□□□ 0.99
CLN3-256ENST00000637107 GPR162Q16538 588 aa21.24■□□□□ 0.99
CLN3-256ENST00000637107 HDAC5Q9UQL6 1122 aa21.23■□□□□ 0.99
CLN3-256ENST00000637107 ARFGEF1Q9Y6D6 1849 aa21.23■□□□□ 0.99
CLN3-256ENST00000637107 PPEF1O14829 653 aaPredicted RBP21.23■□□□□ 0.99
CLN3-256ENST00000637107 RPS8P62241 208 aaKnown RBP21.23■□□□□ 0.99
CLN3-256ENST00000637107 IFIT5Q13325 482 aaKnown RBP21.23■□□□□ 0.99
CLN3-256ENST00000637107 C7orf43Q8WVR3 580 aa21.23■□□□□ 0.99
CLN3-256ENST00000637107 ANKRD18BA2A2Z9 1011 aa21.22■□□□□ 0.99
CLN3-256ENST00000637107 BBOX1O75936 387 aa21.22■□□□□ 0.99
CLN3-256ENST00000637107 CCDC57Q2TAC2 916 aa21.22■□□□□ 0.99
CLN3-256ENST00000637107 ZNF594Q96JF6 807 aaPredicted RBP21.22■□□□□ 0.99
CLN3-256ENST00000637107 SPEF2Q9C093 1822 aa21.22■□□□□ 0.99
CLN3-256ENST00000637107 ANKRD18AQ8IVF6 992 aa21.21■□□□□ 0.99
CLN3-256ENST00000637107 C16orf71Q8IYS4 520 aaPredicted RBP21.21■□□□□ 0.99
CLN3-256ENST00000637107 CDC5LQ99459 802 aaKnown RBP21.21■□□□□ 0.99
CLN3-256ENST00000637107 KLHDC4Q8TBB5 520 aa21.2■□□□□ 0.98
CLN3-256ENST00000637107 SMARCA5O60264 1052 aaPredicted RBP21.19■□□□□ 0.98
CLN3-256ENST00000637107 GSPT1P15170 499 aaKnown RBP21.19■□□□□ 0.98
CLN3-256ENST00000637107 TBC1D2Q9BYX2 928 aa21.19■□□□□ 0.98
CLN3-256ENST00000637107 ATP6V0A2Q9Y487 856 aa21.19■□□□□ 0.98
CLN3-256ENST00000637107 PNMA6EA0A0J9YXQ4 647 aa21.19■□□□□ 0.98
CLN3-256ENST00000637107 TTC22Q5TAA0 569 aa21.19■□□□□ 0.98
CLN3-256ENST00000637107 TBC1D9Q6ZT07 1266 aa21.19■□□□□ 0.98
CLN3-256ENST00000637107 SRGAP3O43295 1099 aa21.18■□□□□ 0.98
CLN3-256ENST00000637107 IGHMBP2P38935 993 aaKnown RBP21.18■□□□□ 0.98
CLN3-256ENST00000637107 RFX5P48382 616 aaPredicted RBP21.18■□□□□ 0.98
CLN3-256ENST00000637107 RBM25P49756 843 aaKnown RBP21.18■□□□□ 0.98
CLN3-256ENST00000637107 ATP8B2P98198 1209 aa21.18■□□□□ 0.98
CLN3-256ENST00000637107 APBB1O00213 710 aa21.17■□□□□ 0.98
CLN3-256ENST00000637107 CDC45O75419 566 aa21.17■□□□□ 0.98
CLN3-256ENST00000637107 MTX1Q13505 466 aa21.17■□□□□ 0.98
CLN3-256ENST00000637107 TAF7LQ5H9L4 462 aa21.17■□□□□ 0.98
CLN3-256ENST00000637107 OTUD7AQ8TE49 926 aaPredicted RBP21.17■□□□□ 0.98
CLN3-256ENST00000637107 BSDC1Q9NW68 430 aaPredicted RBP21.17■□□□□ 0.98
CLN3-256ENST00000637107 SP8Q8IXZ3 490 aa21.17■□□□□ 0.98
CLN3-256ENST00000637107 MPHOSPH8Q99549 860 aa21.17■□□□□ 0.98
CLN3-256ENST00000637107 PTPN12Q05209 780 aaKnown RBP21.16■□□□□ 0.98
CLN3-256ENST00000637107 PUS3Q9BZE2 481 aaKnown RBP21.16■□□□□ 0.98
CLN3-256ENST00000637107 NFKBIBQ15653 356 aa21.16■□□□□ 0.98
CLN3-256ENST00000637107 LDHAL6AQ6ZMR3 332 aa21.16■□□□□ 0.98
CLN3-256ENST00000637107 ARHGAP27Q6ZUM4 889 aa21.16■□□□□ 0.98
CLN3-256ENST00000637107 BCL11AQ9H165 835 aa21.16■□□□□ 0.98
CLN3-256ENST00000637107 PA2G4Q9UQ80 394 aaKnown RBP21.16■□□□□ 0.98
CLN3-256ENST00000637107 LRRC37AA6NMS7 1700 aa21.15■□□□□ 0.98
CLN3-256ENST00000637107 SNED1Q8TER0 1413 aa21.15■□□□□ 0.98
CLN3-256ENST00000637107 CCDC93Q567U6 631 aa21.15■□□□□ 0.98
CLN3-256ENST00000637107 TMC4Q7Z404 712 aa21.15■□□□□ 0.98
CLN3-256ENST00000637107 MINPP1Q9UNW1 487 aa21.14■□□□□ 0.98
CLN3-256ENST00000637107 FER1L6Q2WGJ9 1857 aa21.14■□□□□ 0.97
CLN3-256ENST00000637107 LRRC24Q50LG9 513 aa21.14■□□□□ 0.97
CLN3-256ENST00000637107 SOGA3Q5TF21 947 aa21.14■□□□□ 0.97
CLN3-256ENST00000637107 NFKBIEO00221 500 aa21.13■□□□□ 0.97
CLN3-256ENST00000637107 GRIN3BO60391 1043 aa21.13■□□□□ 0.97
CLN3-256ENST00000637107 GPSM2P81274 684 aa21.13■□□□□ 0.97
CLN3-256ENST00000637107 RASSF7Q02833 373 aa21.13■□□□□ 0.97
CLN3-256ENST00000637107 SIL1Q9H173 461 aa21.13■□□□□ 0.97
CLN3-256ENST00000637107 TMX4Q9H1E5 349 aaPredicted RBP21.13■□□□□ 0.97
CLN3-256ENST00000637107 CNNM1Q9NRU3 951 aa21.13■□□□□ 0.97
CLN3-256ENST00000637107 NSFL1CQ9UNZ2 370 aaKnown RBP21.13■□□□□ 0.97
CLN3-256ENST00000637107 CC2D2BQ6DHV5 1058 aa21.12■□□□□ 0.97
CLN3-256ENST00000637107 SSH3Q8TE77 659 aa21.12■□□□□ 0.97
CLN3-256ENST00000637107 DCAF8L1A6NGE4 600 aa21.12■□□□□ 0.97
CLN3-256ENST00000637107 WTIPA6NIX2 430 aaPredicted RBP21.12■□□□□ 0.97
CLN3-256ENST00000637107 POLA2Q14181 598 aa21.12■□□□□ 0.97
CLN3-256ENST00000637107 RTKN2Q8IZC4 609 aa21.12■□□□□ 0.97
CLN3-256ENST00000637107 EXOC6BQ9Y2D4 811 aa21.12■□□□□ 0.97
CLN3-256ENST00000637107 CHRNDQ07001 517 aa21.11■□□□□ 0.97
CLN3-256ENST00000637107 MPNDQ8N594 471 aa21.11■□□□□ 0.97
CLN3-256ENST00000637107 ANKIB1Q9P2G1 1089 aa21.11■□□□□ 0.97
CLN3-256ENST00000637107 RIPOR2Q9Y4F9 1068 aa21.11■□□□□ 0.97
CLN3-256ENST00000637107 DPP8Q6V1X1 898 aaPredicted RBP21.1■□□□□ 0.97
CLN3-256ENST00000637107 HELBQ8NG08 1087 aaPredicted RBP21.1■□□□□ 0.97
CLN3-256ENST00000637107 OSBPL3Q9H4L5 887 aa21.1■□□□□ 0.97
CLN3-256ENST00000637107 COPRSQ9NQ92 184 aa21.1■□□□□ 0.97
CLN3-256ENST00000637107 DEKP35659 375 aaKnown RBP21.1■□□□□ 0.97
CLN3-256ENST00000637107 LTBP1Q14766 1721 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 DUOX1Q9NRD9 1551 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 EYA2O00167 538 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 EIF5BO60841 1220 aaKnown RBP21.09■□□□□ 0.97
CLN3-256ENST00000637107 TAF5LO75529 589 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 SDSP20132 328 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 PRELPP51888 382 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 FKBP4Q02790 459 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLN3-256ENST00000637107 ATG9AQ7Z3C6 839 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 LRRCC1Q9C099 1032 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 SLKQ9H2G2 1235 aaPredicted RBP21.09■□□□□ 0.97
CLN3-256ENST00000637107 TAOK3Q9H2K8 898 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 ANTXR1Q9H6X2 564 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 POLLQ9UGP5 575 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 A0A1B0GUL6 1792 aa21.09■□□□□ 0.97
CLN3-256ENST00000637107 PODXL2Q9NZ53 605 aa21.08■□□□□ 0.97
CLN3-256ENST00000637107 SNAP23O00161 211 aa21.08■□□□□ 0.96
CLN3-256ENST00000637107 PDE1AP54750 535 aa21.08■□□□□ 0.96
CLN3-256ENST00000637107 GRIPAP1Q4V328 841 aa21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms