RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 TNNI3KQ59H18 835 aa17.35■□□□□ 0.37
CLN3-242ENST00000635958 VGLL2Q8N8G2 317 aa17.35■□□□□ 0.37
CLN3-242ENST00000635958 FPGT-TNNI3KV9GXZ4 949 aa17.35■□□□□ 0.37
CLN3-242ENST00000635958 MROH5Q6ZUA9 1318 aa17.34■□□□□ 0.37
CLN3-242ENST00000635958 CELF1Q92879 486 aaKnown RBP17.34■□□□□ 0.37
CLN3-242ENST00000635958 ANKRD31Q8N7Z5 1873 aa17.34■□□□□ 0.37
CLN3-242ENST00000635958 MX1P20591 662 aa17.33■□□□□ 0.37
CLN3-242ENST00000635958 PDE6BP35913 854 aa17.33■□□□□ 0.37
CLN3-242ENST00000635958 AACSQ86V21 672 aa17.33■□□□□ 0.37
CLN3-242ENST00000635958 CRAMP1Q96RY5 1269 aa17.33■□□□□ 0.37
CLN3-242ENST00000635958 MTFR1LQ9H019 292 aa17.33■□□□□ 0.37
CLN3-242ENST00000635958 AKAP2Q9Y2D5 859 aa17.33■□□□□ 0.37
CLN3-242ENST00000635958 COL4A1P02462 1669 aa17.33■□□□□ 0.36
CLN3-242ENST00000635958 AOX1Q06278 1338 aa17.33■□□□□ 0.36
CLN3-242ENST00000635958 IFIT2P09913 472 aaKnown RBP17.33■□□□□ 0.36
CLN3-242ENST00000635958 GRAPQ13588 217 aa17.33■□□□□ 0.36
CLN3-242ENST00000635958 GRAPLQ8TC17 118 aaPredicted RBP17.33■□□□□ 0.36
CLN3-242ENST00000635958 PDE8BO95263 885 aa17.32■□□□□ 0.36
CLN3-242ENST00000635958 METTL24Q5JXM2 366 aa17.32■□□□□ 0.36
CLN3-242ENST00000635958 RPGRQ92834 1020 aaKnown RBP17.32■□□□□ 0.36
CLN3-242ENST00000635958 RBM17Q96I25 401 aaKnown RBP17.32■□□□□ 0.36
CLN3-242ENST00000635958 TAF1P21675 1872 aa17.32■□□□□ 0.36
CLN3-242ENST00000635958 SRGNP10124 158 aa17.31■□□□□ 0.36
CLN3-242ENST00000635958 BMP2KLQ5H9B9 411 aa17.31■□□□□ 0.36
CLN3-242ENST00000635958 TTC41PQ6P2S7 1318 aa17.31■□□□□ 0.36
CLN3-242ENST00000635958 CCDC8Q9H0W5 538 aaPredicted RBP17.31■□□□□ 0.36
CLN3-242ENST00000635958 DAXXQ9UER7 740 aaPredicted RBP17.31■□□□□ 0.36
CLN3-242ENST00000635958 MINPP1Q9UNW1 487 aa17.31■□□□□ 0.36
CLN3-242ENST00000635958 A0A1B0GUL7 405 aa17.3■□□□□ 0.36
CLN3-242ENST00000635958 BBOX1O75936 387 aa17.3■□□□□ 0.36
CLN3-242ENST00000635958 NPR1P16066 1061 aa17.3■□□□□ 0.36
CLN3-242ENST00000635958 FGFR2P21802 821 aa17.3■□□□□ 0.36
CLN3-242ENST00000635958 TIMM10P62072 90 aa17.3■□□□□ 0.36
CLN3-242ENST00000635958 TTC22Q5TAA0 569 aa17.3■□□□□ 0.36
CLN3-242ENST00000635958 ECHDC1Q9NTX5 307 aa17.3■□□□□ 0.36
CLN3-242ENST00000635958 DBNLQ9UJU6 430 aaKnown RBP17.3■□□□□ 0.36
CLN3-242ENST00000635958 ZNF609O15014 1411 aa17.3■□□□□ 0.36
CLN3-242ENST00000635958 ZBTB7AO95365 584 aa17.29■□□□□ 0.36
CLN3-242ENST00000635958 CHRNDQ07001 517 aa17.29■□□□□ 0.36
CLN3-242ENST00000635958 PI4K2BQ8TCG2 481 aa17.29■□□□□ 0.36
CLN3-242ENST00000635958 MASTLQ96GX5 879 aa17.28■□□□□ 0.36
CLN3-242ENST00000635958 GPATCH3Q96I76 525 aa17.28■□□□□ 0.36
CLN3-242ENST00000635958 TLR7Q9NYK1 1049 aaKnown RBP17.28■□□□□ 0.36
CLN3-242ENST00000635958 C10orf71Q711Q0 1435 aa17.28■□□□□ 0.36
CLN3-242ENST00000635958 GSPT1P15170 499 aaKnown RBP17.28■□□□□ 0.36
CLN3-242ENST00000635958 ALDH1B1P30837 517 aa17.28■□□□□ 0.36
CLN3-242ENST00000635958 PUM3Q15397 648 aaKnown RBP17.28■□□□□ 0.36
CLN3-242ENST00000635958 ATP2B3Q16720 1220 aa17.28■□□□□ 0.36
CLN3-242ENST00000635958 TMC4Q7Z404 712 aa17.28■□□□□ 0.36
CLN3-242ENST00000635958 LPIN2Q92539 896 aa17.28■□□□□ 0.36
CLN3-242ENST00000635958 SGIP1Q9BQI5 828 aa17.28■□□□□ 0.36
CLN3-242ENST00000635958 DBNDD2Q9BQY9 259 aa17.28■□□□□ 0.36
CLN3-242ENST00000635958 ERC2O15083 957 aa17.27■□□□□ 0.36
CLN3-242ENST00000635958 HELBQ8NG08 1087 aaPredicted RBP17.27■□□□□ 0.36
CLN3-242ENST00000635958 NEUROD6Q96NK8 337 aa17.27■□□□□ 0.36
CLN3-242ENST00000635958 ANKRD2Q9GZV1 360 aa17.27■□□□□ 0.36
CLN3-242ENST00000635958 ATF5Q9Y2D1 282 aaPredicted RBP17.27■□□□□ 0.36
CLN3-242ENST00000635958 SPEF2Q9C093 1822 aa17.27■□□□□ 0.35
CLN3-242ENST00000635958 H0YIN7 160 aa17.26■□□□□ 0.35
CLN3-242ENST00000635958 GLRX3O76003 335 aaKnown RBP17.26■□□□□ 0.35
CLN3-242ENST00000635958 POLD1P28340 1107 aa17.26■□□□□ 0.35
CLN3-242ENST00000635958 STYK1Q6J9G0 422 aa17.26■□□□□ 0.35
CLN3-242ENST00000635958 TAF5LO75529 589 aa17.26■□□□□ 0.35
CLN3-242ENST00000635958 ATP5JP18859 108 aa17.26■□□□□ 0.35
CLN3-242ENST00000635958 UBE4AQ14139 1066 aa17.26■□□□□ 0.35
CLN3-242ENST00000635958 TSHZ3Q63HK5 1081 aa17.26■□□□□ 0.35
CLN3-242ENST00000635958 C2CD5Q86YS7 1000 aa17.26■□□□□ 0.35
CLN3-242ENST00000635958 XAGE2Q96GT9 111 aa17.26■□□□□ 0.35
CLN3-242ENST00000635958 COL11A2P13942 1736 aaPredicted RBP17.24■□□□□ 0.35
CLN3-242ENST00000635958 SLC5A1P13866 664 aa17.24■□□□□ 0.35
CLN3-242ENST00000635958 ADORA1P30542 326 aa17.24■□□□□ 0.35
CLN3-242ENST00000635958 SP8Q8IXZ3 490 aa17.24■□□□□ 0.35
CLN3-242ENST00000635958 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.24■□□□□ 0.35
CLN3-242ENST00000635958 ZNF512BQ96KM6 892 aaPredicted RBP17.24■□□□□ 0.35
CLN3-242ENST00000635958 KIF13BQ9NQT8 1826 aa17.23■□□□□ 0.35
CLN3-242ENST00000635958 A0A1B0GUL6 1792 aa17.23■□□□□ 0.35
CLN3-242ENST00000635958 IFIT1P09914 478 aaKnown RBP17.23■□□□□ 0.35
CLN3-242ENST00000635958 SDSP20132 328 aa17.23■□□□□ 0.35
CLN3-242ENST00000635958 PTGER2P43116 358 aa17.23■□□□□ 0.35
CLN3-242ENST00000635958 ATP6V0A2Q9Y487 856 aa17.23■□□□□ 0.35
CLN3-242ENST00000635958 C8orf34Q49A92 452 aa17.22■□□□□ 0.35
CLN3-242ENST00000635958 CCDC158Q5M9N0 1113 aa17.22■□□□□ 0.35
CLN3-242ENST00000635958 CNKSR1Q969H4 720 aa17.22■□□□□ 0.35
CLN3-242ENST00000635958 PODXL2Q9NZ53 605 aa17.22■□□□□ 0.35
CLN3-242ENST00000635958 LEMD3Q9Y2U8 911 aa17.22■□□□□ 0.35
CLN3-242ENST00000635958 SNAP23O00161 211 aa17.21■□□□□ 0.35
CLN3-242ENST00000635958 PPEF1O14829 653 aaPredicted RBP17.21■□□□□ 0.35
CLN3-242ENST00000635958 CHRNA5P30532 468 aa17.21■□□□□ 0.35
CLN3-242ENST00000635958 XDHP47989 1333 aa17.21■□□□□ 0.35
CLN3-242ENST00000635958 TGFB2P61812 414 aa17.21■□□□□ 0.35
CLN3-242ENST00000635958 GORABQ5T7V8 394 aa17.21■□□□□ 0.35
CLN3-242ENST00000635958 ZNF622Q969S3 477 aaKnown RBP eCLIP17.21■□□□□ 0.35
CLN3-242ENST00000635958 ARAP2Q8WZ64 1704 aa17.21■□□□□ 0.34
CLN3-242ENST00000635958 LRRC37AA6NMS7 1700 aa17.2■□□□□ 0.34
CLN3-242ENST00000635958 ZBTB22O15209 634 aa17.2■□□□□ 0.34
CLN3-242ENST00000635958 HAUS7Q99871 368 aa17.2■□□□□ 0.34
CLN3-242ENST00000635958 BOLA2Q9H3K6 86 aa17.2■□□□□ 0.34
CLN3-242ENST00000635958 ZNF804BA4D1E1 1349 aa17.2■□□□□ 0.34
CLN3-242ENST00000635958 WTIPA6NIX2 430 aaPredicted RBP17.19■□□□□ 0.34
CLN3-242ENST00000635958 KCNA3P22001 575 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms