RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 HOXA10P31260 410 aaPredicted RBP23.65■■□□□ 1.38
CCDC9-205ENST00000600117 NPR1P16066 1061 aa23.64■■□□□ 1.37
CCDC9-205ENST00000600117 RABL6Q3YEC7 729 aaPredicted RBP23.64■■□□□ 1.37
CCDC9-205ENST00000600117 ANKRD44Q8N8A2 993 aa23.64■■□□□ 1.37
CCDC9-205ENST00000600117 ABHD8Q96I13 439 aa23.64■■□□□ 1.37
CCDC9-205ENST00000600117 BICC1Q9H694 974 aaKnown RBP23.64■■□□□ 1.37
CCDC9-205ENST00000600117 LRRFIP2Q9Y608 721 aaKnown RBP23.64■■□□□ 1.37
CCDC9-205ENST00000600117 ADAMTSL1Q8N6G6 1762 aa23.64■■□□□ 1.37
CCDC9-205ENST00000600117 EAPPQ56P03 285 aaPredicted RBP23.63■■□□□ 1.37
CCDC9-205ENST00000600117 C7orf43Q8WVR3 580 aa23.63■■□□□ 1.37
CCDC9-205ENST00000600117 COL4A1P02462 1669 aa23.63■■□□□ 1.37
CCDC9-205ENST00000600117 RTL9Q8NET4 1388 aa23.63■■□□□ 1.37
CCDC9-205ENST00000600117 RASSF10A6NK89 507 aa23.62■■□□□ 1.37
CCDC9-205ENST00000600117 HSPA8P11142 646 aaKnown RBP23.62■■□□□ 1.37
CCDC9-205ENST00000600117 CCDC152Q4G0S7 254 aa23.62■■□□□ 1.37
CCDC9-205ENST00000600117 CCDC93Q567U6 631 aa23.62■■□□□ 1.37
CCDC9-205ENST00000600117 LMBR1LQ6UX01 489 aa23.62■■□□□ 1.37
CCDC9-205ENST00000600117 RPGRQ92834 1020 aaKnown RBP23.62■■□□□ 1.37
CCDC9-205ENST00000600117 CRBNQ96SW2 442 aa23.62■■□□□ 1.37
CCDC9-205ENST00000600117 HACL1Q9UJ83 578 aa23.62■■□□□ 1.37
CCDC9-205ENST00000600117 GNAI2P04899 355 aa23.61■■□□□ 1.37
CCDC9-205ENST00000600117 DEFB115Q30KQ5 88 aa23.61■■□□□ 1.37
CCDC9-205ENST00000600117 CCDC85AQ96PX6 553 aaPredicted RBP23.61■■□□□ 1.37
CCDC9-205ENST00000600117 CRAMP1Q96RY5 1269 aa23.61■■□□□ 1.37
CCDC9-205ENST00000600117 GREM2Q9H772 168 aa23.61■■□□□ 1.37
CCDC9-205ENST00000600117 HDAC5Q9UQL6 1122 aa23.61■■□□□ 1.37
CCDC9-205ENST00000600117 CLEC11AQ9Y240 323 aa23.61■■□□□ 1.37
CCDC9-205ENST00000600117 TAF1P21675 1872 aa23.6■■□□□ 1.37
CCDC9-205ENST00000600117 MAP2K1Q02750 393 aaPredicted RBP23.6■■□□□ 1.37
CCDC9-205ENST00000600117 FAM161AQ3B820 660 aa23.6■■□□□ 1.37
CCDC9-205ENST00000600117 SEC31BQ9NQW1 1179 aa23.6■■□□□ 1.37
CCDC9-205ENST00000600117 ZBTB40Q9NUA8 1239 aa23.6■■□□□ 1.37
CCDC9-205ENST00000600117 ZNF541Q9H0D2 1346 aa23.59■■□□□ 1.37
CCDC9-205ENST00000600117 EPHX2P34913 555 aa23.59■■□□□ 1.37
CCDC9-205ENST00000600117 FKBP4Q02790 459 aaKnown RBP eCLIP23.59■■□□□ 1.37
CCDC9-205ENST00000600117 PNMA8AQ86V59 439 aaPredicted RBP23.59■■□□□ 1.37
CCDC9-205ENST00000600117 RBM17Q96I25 401 aaKnown RBP23.59■■□□□ 1.37
CCDC9-205ENST00000600117 DDX46Q7L014 1031 aaKnown RBP23.58■■□□□ 1.37
CCDC9-205ENST00000600117 C1orf115Q9H7X2 142 aa23.58■■□□□ 1.37
CCDC9-205ENST00000600117 WDR33Q9C0J8 1336 aaKnown RBP23.58■■□□□ 1.36
CCDC9-205ENST00000600117 CNTROBQ8N137 903 aa23.57■■□□□ 1.36
CCDC9-205ENST00000600117 CELF1Q92879 486 aaKnown RBP23.57■■□□□ 1.36
CCDC9-205ENST00000600117 CHMP4BQ9H444 224 aaKnown RBP23.57■■□□□ 1.36
CCDC9-205ENST00000600117 ITGA6P23229 1130 aa23.56■■□□□ 1.36
CCDC9-205ENST00000600117 ALDH1B1P30837 517 aa23.56■■□□□ 1.36
CCDC9-205ENST00000600117 MTX1Q13505 466 aa23.56■■□□□ 1.36
CCDC9-205ENST00000600117 GRAPQ13588 217 aa23.56■■□□□ 1.36
CCDC9-205ENST00000600117 GRAPLQ8TC17 118 aaPredicted RBP23.56■■□□□ 1.36
CCDC9-205ENST00000600117 ZNF277Q9NRM2 450 aaPredicted RBP23.56■■□□□ 1.36
CCDC9-205ENST00000600117 CHMP3Q9Y3E7 222 aa23.56■■□□□ 1.36
CCDC9-205ENST00000600117 MAP1SQ66K74 1059 aaPredicted RBP23.55■■□□□ 1.36
CCDC9-205ENST00000600117 IRX6P78412 446 aaPredicted RBP23.54■■□□□ 1.36
CCDC9-205ENST00000600117 RTKN2Q8IZC4 609 aa23.54■■□□□ 1.36
CCDC9-205ENST00000600117 THSD7BQ9C0I4 1608 aa23.53■■□□□ 1.36
CCDC9-205ENST00000600117 FZD9O00144 591 aa23.53■■□□□ 1.36
CCDC9-205ENST00000600117 RFX5P48382 616 aaPredicted RBP23.53■■□□□ 1.36
CCDC9-205ENST00000600117 IFIT5Q13325 482 aaKnown RBP23.53■■□□□ 1.36
CCDC9-205ENST00000600117 ABT1Q9ULW3 272 aaKnown RBP23.53■■□□□ 1.36
CCDC9-205ENST00000600117 ANKRD18BA2A2Z9 1011 aa23.52■■□□□ 1.36
CCDC9-205ENST00000600117 BBOX1O75936 387 aa23.52■■□□□ 1.36
CCDC9-205ENST00000600117 RPS8P62241 208 aaKnown RBP23.52■■□□□ 1.36
CCDC9-205ENST00000600117 CCDC57Q2TAC2 916 aa23.52■■□□□ 1.36
CCDC9-205ENST00000600117 SLC51AQ86UW1 340 aa23.52■■□□□ 1.36
CCDC9-205ENST00000600117 GPC2Q8N158 579 aa23.52■■□□□ 1.36
CCDC9-205ENST00000600117 EXOC6Q8TAG9 804 aa23.52■■□□□ 1.36
CCDC9-205ENST00000600117 CDC5LQ99459 802 aaKnown RBP23.52■■□□□ 1.36
CCDC9-205ENST00000600117 SPEF2Q9C093 1822 aa23.52■■□□□ 1.36
CCDC9-205ENST00000600117 PNMA6EA0A0J9YXQ4 647 aa23.51■■□□□ 1.35
CCDC9-205ENST00000600117 PPEF1O14829 653 aaPredicted RBP23.51■■□□□ 1.35
CCDC9-205ENST00000600117 IARSP41252 1262 aaKnown RBP23.51■■□□□ 1.35
CCDC9-205ENST00000600117 ATP8B2P98198 1209 aa23.51■■□□□ 1.35
CCDC9-205ENST00000600117 MLLT1Q03111 559 aaPredicted RBP23.51■■□□□ 1.35
CCDC9-205ENST00000600117 CEP85Q6P2H3 762 aa23.51■■□□□ 1.35
CCDC9-205ENST00000600117 LRRC37AA6NMS7 1700 aa23.5■■□□□ 1.35
CCDC9-205ENST00000600117 TNRC18O15417 2968 aaPredicted RBP23.5■■□□□ 1.35
CCDC9-205ENST00000600117 RGS19P49795 217 aa23.5■■□□□ 1.35
CCDC9-205ENST00000600117 OLFM4Q6UX06 510 aa23.5■■□□□ 1.35
CCDC9-205ENST00000600117 ANKRD18AQ8IVF6 992 aa23.5■■□□□ 1.35
CCDC9-205ENST00000600117 ZNF594Q96JF6 807 aaPredicted RBP23.5■■□□□ 1.35
CCDC9-205ENST00000600117 SRGAP3O43295 1099 aa23.49■■□□□ 1.35
CCDC9-205ENST00000600117 POLA2Q14181 598 aa23.49■■□□□ 1.35
CCDC9-205ENST00000600117 TRPM7Q96QT4 1865 aa23.48■■□□□ 1.35
CCDC9-205ENST00000600117 PTPN12Q05209 780 aaKnown RBP23.48■■□□□ 1.35
CCDC9-205ENST00000600117 BEGAINQ9BUH8 593 aa23.48■■□□□ 1.35
CCDC9-205ENST00000600117 PCDH10Q9P2E7 1040 aa23.48■■□□□ 1.35
CCDC9-205ENST00000600117 ATP6V0A2Q9Y487 856 aa23.48■■□□□ 1.35
CCDC9-205ENST00000600117 SNED1Q8TER0 1413 aa23.48■■□□□ 1.35
CCDC9-205ENST00000600117 CCDC85CA6NKD9 419 aa23.47■■□□□ 1.35
CCDC9-205ENST00000600117 IGHMBP2P38935 993 aaKnown RBP23.47■■□□□ 1.35
CCDC9-205ENST00000600117 ECE1P42892 770 aa23.47■■□□□ 1.35
CCDC9-205ENST00000600117 TMC4Q7Z404 712 aa23.47■■□□□ 1.35
CCDC9-205ENST00000600117 SIRT2Q8IXJ6 389 aa23.47■■□□□ 1.35
CCDC9-205ENST00000600117 RPAP2Q8IXW5 612 aaPredicted RBP23.47■■□□□ 1.35
CCDC9-205ENST00000600117 SP8Q8IXZ3 490 aa23.47■■□□□ 1.35
CCDC9-205ENST00000600117 KLHDC4Q8TBB5 520 aa23.47■■□□□ 1.35
CCDC9-205ENST00000600117 SSH3Q8TE77 659 aa23.47■■□□□ 1.35
CCDC9-205ENST00000600117 CAPNS2Q96L46 248 aa23.47■■□□□ 1.35
CCDC9-205ENST00000600117 BSDC1Q9NW68 430 aaPredicted RBP23.47■■□□□ 1.35
CCDC9-205ENST00000600117 AAMPQ13685 434 aa23.46■■□□□ 1.35
CCDC9-205ENST00000600117 PCDHB15Q9Y5E8 787 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms