RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 API5Q9BZZ5 524 aaKnown RBP20.39■□□□□ 0.85
TRIM28-213ENST00000598355 USP44Q9H0E7 712 aa20.39■□□□□ 0.85
TRIM28-213ENST00000598355 EIF6P56537 245 aaKnown RBP20.38■□□□□ 0.85
TRIM28-213ENST00000598355 LMBR1LQ6UX01 489 aa20.38■□□□□ 0.85
TRIM28-213ENST00000598355 ZNRF3Q9ULT6 936 aa20.38■□□□□ 0.85
TRIM28-213ENST00000598355 MINPP1Q9UNW1 487 aa20.38■□□□□ 0.85
TRIM28-213ENST00000598355 YDJCA8MPS7 323 aa20.37■□□□□ 0.85
TRIM28-213ENST00000598355 CCT4P50991 539 aaKnown RBP20.37■□□□□ 0.85
TRIM28-213ENST00000598355 WASHC4Q2M389 1173 aa20.37■□□□□ 0.85
TRIM28-213ENST00000598355 EYA3Q99504 573 aa20.37■□□□□ 0.85
TRIM28-213ENST00000598355 GGA1Q9UJY5 639 aa20.37■□□□□ 0.85
TRIM28-213ENST00000598355 ZNF609O15014 1411 aa20.36■□□□□ 0.85
TRIM28-213ENST00000598355 MED23Q9ULK4 1368 aa20.36■□□□□ 0.85
TRIM28-213ENST00000598355 ANKRD18BA2A2Z9 1011 aa20.36■□□□□ 0.85
TRIM28-213ENST00000598355 IQCA1LA6NCM1 817 aa20.36■□□□□ 0.85
TRIM28-213ENST00000598355 UFL1O94874 794 aa20.36■□□□□ 0.85
TRIM28-213ENST00000598355 IGHMBP2P38935 993 aaKnown RBP20.36■□□□□ 0.85
TRIM28-213ENST00000598355 C6orf229H3BNL8 230 aa20.35■□□□□ 0.85
TRIM28-213ENST00000598355 ATP2B4P23634 1241 aa20.35■□□□□ 0.85
TRIM28-213ENST00000598355 CXCL9Q07325 125 aa20.35■□□□□ 0.85
TRIM28-213ENST00000598355 IFIT5Q13325 482 aaKnown RBP20.35■□□□□ 0.85
TRIM28-213ENST00000598355 ANKRD44Q8N8A2 993 aa20.35■□□□□ 0.85
TRIM28-213ENST00000598355 BICC1Q9H694 974 aaKnown RBP20.35■□□□□ 0.85
TRIM28-213ENST00000598355 ANKIB1Q9P2G1 1089 aa20.35■□□□□ 0.85
TRIM28-213ENST00000598355 BCAR3O75815 825 aa20.34■□□□□ 0.85
TRIM28-213ENST00000598355 TRIM27P14373 513 aa20.34■□□□□ 0.85
TRIM28-213ENST00000598355 SCNN1DP51172 638 aa20.34■□□□□ 0.85
TRIM28-213ENST00000598355 FSTL1Q12841 308 aa20.34■□□□□ 0.85
TRIM28-213ENST00000598355 INTS3Q68E01 1043 aaKnown RBP20.34■□□□□ 0.85
TRIM28-213ENST00000598355 C16orf71Q8IYS4 520 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-213ENST00000598355 GPR101Q96P66 508 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-213ENST00000598355 TAF1DQ9H5J8 278 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-213ENST00000598355 MPHOSPH8Q99549 860 aa20.33■□□□□ 0.85
TRIM28-213ENST00000598355 HACL1Q9UJ83 578 aa20.33■□□□□ 0.85
TRIM28-213ENST00000598355 CEP350Q5VT06 3117 aa20.33■□□□□ 0.84
TRIM28-213ENST00000598355 IRS2Q9Y4H2 1338 aa20.32■□□□□ 0.84
TRIM28-213ENST00000598355 ATF7IPQ6VMQ6 1270 aa20.32■□□□□ 0.84
TRIM28-213ENST00000598355 LEMD3Q9Y2U8 911 aa20.32■□□□□ 0.84
TRIM28-213ENST00000598355 WTIPA6NIX2 430 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-213ENST00000598355 IPO8O15397 1037 aaKnown RBP20.31■□□□□ 0.84
TRIM28-213ENST00000598355 ECE2O60344 883 aa20.31■□□□□ 0.84
TRIM28-213ENST00000598355 CHRNDQ07001 517 aa20.31■□□□□ 0.84
TRIM28-213ENST00000598355 CCDC57Q2TAC2 916 aa20.31■□□□□ 0.84
TRIM28-213ENST00000598355 CIAPIN1Q6FI81 312 aa20.31■□□□□ 0.84
TRIM28-213ENST00000598355 SMC1BQ8NDV3 1235 aa20.31■□□□□ 0.84
TRIM28-213ENST00000598355 ANKRD2Q9GZV1 360 aa20.31■□□□□ 0.84
TRIM28-213ENST00000598355 DBNDD1Q9H9R9 158 aa20.31■□□□□ 0.84
TRIM28-213ENST00000598355 RIMBP2O15034 1052 aa20.3■□□□□ 0.84
TRIM28-213ENST00000598355 HSPA6P17066 643 aa20.3■□□□□ 0.84
TRIM28-213ENST00000598355 ZC3H12CQ9C0D7 883 aaKnown RBP20.3■□□□□ 0.84
TRIM28-213ENST00000598355 CHMP3Q9Y3E7 222 aa20.3■□□□□ 0.84
TRIM28-213ENST00000598355 GJA3Q9Y6H8 435 aa20.3■□□□□ 0.84
TRIM28-213ENST00000598355 POTEIP0CG38 1075 aa20.29■□□□□ 0.84
TRIM28-213ENST00000598355 POTEJP0CG39 1038 aa20.29■□□□□ 0.84
TRIM28-213ENST00000598355 EPHX2P34913 555 aa20.29■□□□□ 0.84
TRIM28-213ENST00000598355 ZNF594Q96JF6 807 aaPredicted RBP20.29■□□□□ 0.84
TRIM28-213ENST00000598355 GPRC5DQ9NZD1 345 aa20.29■□□□□ 0.84
TRIM28-213ENST00000598355 TNNQ9UQP3 1299 aa20.29■□□□□ 0.84
TRIM28-213ENST00000598355 RAD17O75943 681 aa20.28■□□□□ 0.84
TRIM28-213ENST00000598355 TNIP1Q15025 636 aa20.28■□□□□ 0.84
TRIM28-213ENST00000598355 C15orf52Q6ZUT6 534 aaKnown RBP20.28■□□□□ 0.84
TRIM28-213ENST00000598355 LDHDQ86WU2 507 aa20.28■□□□□ 0.84
TRIM28-213ENST00000598355 ZNF804BA4D1E1 1349 aa20.27■□□□□ 0.84
TRIM28-213ENST00000598355 ARAP2Q8WZ64 1704 aa20.27■□□□□ 0.84
TRIM28-213ENST00000598355 UBTFL1P0CB47 393 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-213ENST00000598355 GMPSP49915 693 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-213ENST00000598355 DOK7Q18PE1 504 aa20.27■□□□□ 0.84
TRIM28-213ENST00000598355 ZKSCAN2Q63HK3 967 aa20.27■□□□□ 0.84
TRIM28-213ENST00000598355 LDHAL6AQ6ZMR3 332 aa20.27■□□□□ 0.84
TRIM28-213ENST00000598355 MEIS3Q99687 375 aa20.27■□□□□ 0.84
TRIM28-213ENST00000598355 PSMD14O00487 310 aa20.26■□□□□ 0.83
TRIM28-213ENST00000598355 LMOD1P29536 600 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-213ENST00000598355 EPS15P42566 896 aa20.26■□□□□ 0.83
TRIM28-213ENST00000598355 RFX5P48382 616 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-213ENST00000598355 PODNQ7Z5L7 613 aa20.26■□□□□ 0.83
TRIM28-213ENST00000598355 PNMA8AQ86V59 439 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-213ENST00000598355 TXNRD3Q86VQ6 643 aa20.26■□□□□ 0.83
TRIM28-213ENST00000598355 RIPOR2Q9Y4F9 1068 aa20.26■□□□□ 0.83
TRIM28-213ENST00000598355 TRPM7Q96QT4 1865 aa20.25■□□□□ 0.83
TRIM28-213ENST00000598355 VIL1P09327 827 aaKnown RBP20.25■□□□□ 0.83
TRIM28-213ENST00000598355 KLRK1P26718 216 aa20.25■□□□□ 0.83
TRIM28-213ENST00000598355 TAF7LQ5H9L4 462 aa20.25■□□□□ 0.83
TRIM28-213ENST00000598355 CHADLQ6NUI6 762 aa20.25■□□□□ 0.83
TRIM28-213ENST00000598355 DPF2Q92785 391 aa20.25■□□□□ 0.83
TRIM28-213ENST00000598355 FRAT1Q92837 279 aaPredicted RBP20.25■□□□□ 0.83
TRIM28-213ENST00000598355 KCNQ5Q9NR82 932 aa20.25■□□□□ 0.83
TRIM28-213ENST00000598355 RPS12P25398 132 aaKnown RBP20.24■□□□□ 0.83
TRIM28-213ENST00000598355 PUS3Q9BZE2 481 aaKnown RBP20.24■□□□□ 0.83
TRIM28-213ENST00000598355 COA1Q9GZY4 146 aa20.24■□□□□ 0.83
TRIM28-213ENST00000598355 TAF5LO75529 589 aa20.23■□□□□ 0.83
TRIM28-213ENST00000598355 MTX1Q13505 466 aa20.23■□□□□ 0.83
TRIM28-213ENST00000598355 USP50Q70EL3 339 aaPredicted RBP20.23■□□□□ 0.83
TRIM28-213ENST00000598355 VGLL2Q8N8G2 317 aa20.23■□□□□ 0.83
TRIM28-213ENST00000598355 CNNM1Q9NRU3 951 aa20.23■□□□□ 0.83
TRIM28-213ENST00000598355 ADARB2Q9NS39 739 aaKnown RBP20.23■□□□□ 0.83
TRIM28-213ENST00000598355 HDAC5Q9UQL6 1122 aa20.23■□□□□ 0.83
TRIM28-213ENST00000598355 LRRFIP2Q9Y608 721 aaKnown RBP20.23■□□□□ 0.83
TRIM28-213ENST00000598355 MYH13Q9UKX3 1938 aa20.23■□□□□ 0.83
TRIM28-213ENST00000598355 SNAP23O00161 211 aa20.22■□□□□ 0.83
TRIM28-213ENST00000598355 GNAI3P08754 354 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms