RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 TRAF5O00463 557 aa17.48■□□□□ 0.39
TRIM28-211ENST00000597968 CA12O43570 354 aa17.48■□□□□ 0.39
TRIM28-211ENST00000597968 CELF2O95319 508 aaKnown RBP17.48■□□□□ 0.39
TRIM28-211ENST00000597968 VIL1P09327 827 aaKnown RBP17.48■□□□□ 0.39
TRIM28-211ENST00000597968 ANKRD18AQ8IVF6 992 aa17.48■□□□□ 0.39
TRIM28-211ENST00000597968 DBNDD1Q9H9R9 158 aa17.48■□□□□ 0.39
TRIM28-211ENST00000597968 ANKIB1Q9P2G1 1089 aa17.48■□□□□ 0.39
TRIM28-211ENST00000597968 RTL9Q8NET4 1388 aa17.48■□□□□ 0.39
TRIM28-211ENST00000597968 XDHP47989 1333 aa17.47■□□□□ 0.39
TRIM28-211ENST00000597968 PI4KAP2A4QPH2 592 aa17.47■□□□□ 0.39
TRIM28-211ENST00000597968 CCDC184Q52MB2 194 aa17.47■□□□□ 0.39
TRIM28-211ENST00000597968 PI4KAP1Q8N8J0 262 aa17.47■□□□□ 0.39
TRIM28-211ENST00000597968 AGBL3Q8NEM8 1001 aa17.47■□□□□ 0.39
TRIM28-211ENST00000597968 SEC31BQ9NQW1 1179 aa17.47■□□□□ 0.39
TRIM28-211ENST00000597968 TAF1P21675 1872 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 G3V3G9 751 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 RIMBP2O15034 1052 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 UFL1O94874 794 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 ATP2B4P23634 1241 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 MMP14P50281 582 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 CTSWP56202 376 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 TWISTNBQ3B726 338 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-211ENST00000597968 DCAF8Q5TAQ9 597 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 PODNQ7Z5L7 613 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 TSPYL6Q8N831 410 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 TRPM4Q8TD43 1214 aa17.46■□□□□ 0.39
TRIM28-211ENST00000597968 GLIS2Q9BZE0 524 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-211ENST00000597968 ZBTB12Q9Y330 459 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-211ENST00000597968 IGKV5-2P06315 115 aa17.45■□□□□ 0.38
TRIM28-211ENST00000597968 HSPA8P11142 646 aaKnown RBP17.45■□□□□ 0.38
TRIM28-211ENST00000597968 PAXIP1Q6ZW49 1069 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-211ENST00000597968 WDR63Q8IWG1 891 aa17.45■□□□□ 0.38
TRIM28-211ENST00000597968 ZNF428Q96B54 188 aa17.45■□□□□ 0.38
TRIM28-211ENST00000597968 BSDC1Q9NW68 430 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-211ENST00000597968 LBX1P52954 281 aa17.44■□□□□ 0.38
TRIM28-211ENST00000597968 FMR1Q06787 632 aaKnown RBP eCLIP17.44■□□□□ 0.382e-10■■■■□ 24.8
TRIM28-211ENST00000597968 CYP4F22Q6NT55 531 aa17.44■□□□□ 0.38
TRIM28-211ENST00000597968 TTLL11Q8NHH1 800 aa17.44■□□□□ 0.38
TRIM28-211ENST00000597968 DCPSQ96C86 337 aaKnown RBP17.44■□□□□ 0.38
TRIM28-211ENST00000597968 PLA2G12BQ9BX93 195 aa17.44■□□□□ 0.38
TRIM28-211ENST00000597968 NEURL1BA8MQ27 555 aa17.43■□□□□ 0.38
TRIM28-211ENST00000597968 SLC4A2P04920 1241 aa17.43■□□□□ 0.38
TRIM28-211ENST00000597968 BRPF1P55201 1214 aaPredicted RBP17.43■□□□□ 0.38
TRIM28-211ENST00000597968 NOGQ13253 232 aa17.43■□□□□ 0.38
TRIM28-211ENST00000597968 DOK7Q18PE1 504 aa17.43■□□□□ 0.38
TRIM28-211ENST00000597968 SAMD7Q7Z3H4 446 aa17.43■□□□□ 0.38
TRIM28-211ENST00000597968 TSR2Q969E8 191 aaKnown RBP17.43■□□□□ 0.38
TRIM28-211ENST00000597968 MYH16Q9H6N6 1097 aa17.43■□□□□ 0.38
TRIM28-211ENST00000597968 MED23Q9ULK4 1368 aa17.42■□□□□ 0.38
TRIM28-211ENST00000597968 H7C1W4 665 aa17.42■□□□□ 0.38
TRIM28-211ENST00000597968 ANP32CO43423 234 aa17.42■□□□□ 0.38
TRIM28-211ENST00000597968 ZNF280AP59817 542 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-211ENST00000597968 RSBN1LQ6PCB5 846 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-211ENST00000597968 KRT26Q7Z3Y9 468 aa17.42■□□□□ 0.38
TRIM28-211ENST00000597968 COL4A1P02462 1669 aa17.42■□□□□ 0.38
TRIM28-211ENST00000597968 KIF4BQ2VIQ3 1234 aa17.41■□□□□ 0.38
TRIM28-211ENST00000597968 USP48Q86UV5 1035 aa17.41■□□□□ 0.38
TRIM28-211ENST00000597968 MRS2Q9HD23 443 aa17.41■□□□□ 0.38
TRIM28-211ENST00000597968 CAPN15O75808 1086 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 FLIIQ13045 1269 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 TBC1D10BQ4KMP7 808 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-211ENST00000597968 SULF1Q8IWU6 871 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 C2orf69Q8N8R5 385 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 LINS1Q8NG48 757 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 KCNQ5Q9NR82 932 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 MINPP1Q9UNW1 487 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 LEMD3Q9Y2U8 911 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 MYO3BQ8WXR4 1341 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 PITPNM2Q9BZ72 1349 aa17.4■□□□□ 0.38
TRIM28-211ENST00000597968 SHTN1A0MZ66 631 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 USP17L3A6NCW0 530 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 USP17L4A6NCW7 530 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 ZNF316A6NFI3 1004 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-211ENST00000597968 IGHMBP2P38935 993 aaKnown RBP17.39■□□□□ 0.37
TRIM28-211ENST00000597968 GCKRQ14397 625 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 USP17L1Q7RTZ2 530 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 CCDC102AQ96A19 550 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 GMLQ99445 158 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 GREM2Q9H772 168 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 ZNF408Q9H9D4 720 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 GBA2Q9HCG7 927 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-211ENST00000597968 FANCIQ9NVI1 1328 aa17.39■□□□□ 0.37
TRIM28-211ENST00000597968 USP17L8P0C7I0 530 aa17.38■□□□□ 0.37
TRIM28-211ENST00000597968 CCT4P50991 539 aaKnown RBP17.38■□□□□ 0.37
TRIM28-211ENST00000597968 HUNKP57058 714 aa17.38■□□□□ 0.37
TRIM28-211ENST00000597968 FKBP1BP68106 108 aa17.38■□□□□ 0.37
TRIM28-211ENST00000597968 CWF19L2Q2TBE0 894 aaKnown RBP17.38■□□□□ 0.37
TRIM28-211ENST00000597968 REM2Q8IYK8 340 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-211ENST00000597968 DNAAF4Q8WXU2 420 aa17.38■□□□□ 0.37
TRIM28-211ENST00000597968 ANKRD2Q9GZV1 360 aa17.38■□□□□ 0.37
TRIM28-211ENST00000597968 COA1Q9GZY4 146 aa17.38■□□□□ 0.37
TRIM28-211ENST00000597968 VAMP4O75379 141 aa17.37■□□□□ 0.37
TRIM28-211ENST00000597968 EGFRP00533 1210 aa17.37■□□□□ 0.37
TRIM28-211ENST00000597968 CSF1RP07333 972 aa17.37■□□□□ 0.37
TRIM28-211ENST00000597968 GRM1Q13255 1194 aa17.37■□□□□ 0.37
TRIM28-211ENST00000597968 FKBP5Q13451 457 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-211ENST00000597968 RGMBQ6NW40 437 aa17.37■□□□□ 0.37
TRIM28-211ENST00000597968 UBE3BQ7Z3V4 1068 aa17.37■□□□□ 0.37
TRIM28-211ENST00000597968 CCDC85AQ96PX6 553 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-211ENST00000597968 CACNA1FO60840 1977 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms