RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 GTF3C3Q9Y5Q9 886 aa18.76■□□□□ 0.59
TRIM28-207ENST00000597136 TMC4Q7Z404 712 aa18.75■□□□□ 0.59
TRIM28-207ENST00000597136 KLHDC4Q8TBB5 520 aa18.75■□□□□ 0.59
TRIM28-207ENST00000597136 BSDC1Q9NW68 430 aaPredicted RBP18.75■□□□□ 0.59
TRIM28-207ENST00000597136 MINPP1Q9UNW1 487 aa18.75■□□□□ 0.59
TRIM28-207ENST00000597136 NSFL1CQ9UNZ2 370 aaKnown RBP18.75■□□□□ 0.59
TRIM28-207ENST00000597136 COL4A5P29400 1685 aa18.74■□□□□ 0.59
TRIM28-207ENST00000597136 LTBP3Q9NS15 1303 aa18.74■□□□□ 0.59
TRIM28-207ENST00000597136 AAMPQ13685 434 aa18.74■□□□□ 0.59
TRIM28-207ENST00000597136 PUS3Q9BZE2 481 aaKnown RBP18.74■□□□□ 0.59
TRIM28-207ENST00000597136 C1orf115Q9H7X2 142 aa18.74■□□□□ 0.59
TRIM28-207ENST00000597136 RNF181Q9P0P0 153 aa18.74■□□□□ 0.59
TRIM28-207ENST00000597136 LMNB1P20700 586 aa18.73■□□□□ 0.59
TRIM28-207ENST00000597136 IGHMBP2P38935 993 aaKnown RBP18.73■□□□□ 0.59
TRIM28-207ENST00000597136 DPP8Q6V1X1 898 aaPredicted RBP18.73■□□□□ 0.59
TRIM28-207ENST00000597136 PSMD1Q99460 953 aa18.73■□□□□ 0.59
TRIM28-207ENST00000597136 TMX4Q9H1E5 349 aaPredicted RBP18.73■□□□□ 0.59
TRIM28-207ENST00000597136 POLLQ9UGP5 575 aa18.73■□□□□ 0.59
TRIM28-207ENST00000597136 SCN9AQ15858 1988 aa18.73■□□□□ 0.59
TRIM28-207ENST00000597136 RFX5P48382 616 aaPredicted RBP18.72■□□□□ 0.59
TRIM28-207ENST00000597136 GPR101Q96P66 508 aaPredicted RBP18.72■□□□□ 0.59
TRIM28-207ENST00000597136 MPHOSPH8Q99549 860 aa18.72■□□□□ 0.59
TRIM28-207ENST00000597136 GNAI2P04899 355 aa18.72■□□□□ 0.59
TRIM28-207ENST00000597136 YY1P25490 414 aa18.71■□□□□ 0.59
TRIM28-207ENST00000597136 TAF7LQ5H9L4 462 aa18.71■□□□□ 0.59
TRIM28-207ENST00000597136 LDHAL6AQ6ZMR3 332 aa18.71■□□□□ 0.59
TRIM28-207ENST00000597136 HELBQ8NG08 1087 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-207ENST00000597136 RTFDC1Q9BY42 306 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-207ENST00000597136 ANKIB1Q9P2G1 1089 aa18.71■□□□□ 0.59
TRIM28-207ENST00000597136 SNAP23O00161 211 aa18.7■□□□□ 0.58
TRIM28-207ENST00000597136 IARSP41252 1262 aaKnown RBP18.7■□□□□ 0.58
TRIM28-207ENST00000597136 GRIPAP1Q4V328 841 aa18.7■□□□□ 0.58
TRIM28-207ENST00000597136 LRRC24Q50LG9 513 aa18.7■□□□□ 0.58
TRIM28-207ENST00000597136 TBC1D16Q8TBP0 767 aa18.7■□□□□ 0.58
TRIM28-207ENST00000597136 HDAC5Q9UQL6 1122 aa18.7■□□□□ 0.58
TRIM28-207ENST00000597136 C6orf229H3BNL8 230 aa18.69■□□□□ 0.58
TRIM28-207ENST00000597136 TAF5LO75529 589 aa18.69■□□□□ 0.58
TRIM28-207ENST00000597136 PTPN12Q05209 780 aaKnown RBP18.69■□□□□ 0.58
TRIM28-207ENST00000597136 CHRNDQ07001 517 aa18.69■□□□□ 0.58
TRIM28-207ENST00000597136 AOC3Q16853 763 aa18.69■□□□□ 0.58
TRIM28-207ENST00000597136 PODXL2Q9NZ53 605 aa18.69■□□□□ 0.58
TRIM28-207ENST00000597136 PSME4Q14997 1843 aa18.69■□□□□ 0.58
TRIM28-207ENST00000597136 PNMA6EA0A0J9YXQ4 647 aa18.68■□□□□ 0.58
TRIM28-207ENST00000597136 CNNM1Q9NRU3 951 aa18.68■□□□□ 0.58
TRIM28-207ENST00000597136 PA2G4Q9UQ80 394 aaKnown RBP18.68■□□□□ 0.58
TRIM28-207ENST00000597136 RIPOR2Q9Y4F9 1068 aa18.68■□□□□ 0.58
TRIM28-207ENST00000597136 RIMBP2O15034 1052 aa18.68■□□□□ 0.58
TRIM28-207ENST00000597136 XDHP47989 1333 aa18.67■□□□□ 0.58
TRIM28-207ENST00000597136 SRGAP3O43295 1099 aa18.67■□□□□ 0.58
TRIM28-207ENST00000597136 PPIP5K2O43314 1243 aa18.67■□□□□ 0.58
TRIM28-207ENST00000597136 UFL1O94874 794 aa18.67■□□□□ 0.58
TRIM28-207ENST00000597136 MTX1Q13505 466 aa18.67■□□□□ 0.58
TRIM28-207ENST00000597136 SIL1Q9H173 461 aa18.67■□□□□ 0.58
TRIM28-207ENST00000597136 GGA1Q9UJY5 639 aa18.67■□□□□ 0.58
TRIM28-207ENST00000597136 PCDHB15Q9Y5E8 787 aa18.67■□□□□ 0.58
TRIM28-207ENST00000597136 ATP8B2P98198 1209 aa18.66■□□□□ 0.58
TRIM28-207ENST00000597136 WASHC4Q2M389 1173 aa18.66■□□□□ 0.58
TRIM28-207ENST00000597136 LARGE2Q8N3Y3 721 aa18.66■□□□□ 0.58
TRIM28-207ENST00000597136 SUPT20HQ8NEM7 779 aa18.66■□□□□ 0.58
TRIM28-207ENST00000597136 PPP4R2Q9NY27 417 aa18.66■□□□□ 0.58
TRIM28-207ENST00000597136 MYH13Q9UKX3 1938 aa18.66■□□□□ 0.58
TRIM28-207ENST00000597136 ATG9AQ7Z3C6 839 aa18.65■□□□□ 0.58
TRIM28-207ENST00000597136 ZNF646O15015 1829 aaPredicted RBP18.65■□□□□ 0.58
TRIM28-207ENST00000597136 ATP2B4P23634 1241 aa18.64■□□□□ 0.58
TRIM28-207ENST00000597136 KIAA2012Q0VF49 1180 aa18.64■□□□□ 0.58
TRIM28-207ENST00000597136 TXNRD3Q86VQ6 643 aa18.64■□□□□ 0.58
TRIM28-207ENST00000597136 ANKRD2Q9GZV1 360 aa18.64■□□□□ 0.58
TRIM28-207ENST00000597136 EYA2O00167 538 aa18.64■□□□□ 0.57
TRIM28-207ENST00000597136 KLRK1P26718 216 aa18.64■□□□□ 0.57
TRIM28-207ENST00000597136 DOK7Q18PE1 504 aa18.64■□□□□ 0.57
TRIM28-207ENST00000597136 ZNF526Q8TF50 670 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-207ENST00000597136 COPRSQ9NQ92 184 aa18.64■□□□□ 0.57
TRIM28-207ENST00000597136 CEP85Q6P2H3 762 aa18.63■□□□□ 0.57
TRIM28-207ENST00000597136 JDP2Q8WYK2 163 aa18.63■□□□□ 0.57
TRIM28-207ENST00000597136 ZC3H12CQ9C0D7 883 aaKnown RBP18.63■□□□□ 0.57
TRIM28-207ENST00000597136 VPS33BQ9H267 617 aa18.63■□□□□ 0.57
TRIM28-207ENST00000597136 POLR2AP24928 1970 aaKnown RBP18.63■□□□□ 0.57
TRIM28-207ENST00000597136 ZNF804BA4D1E1 1349 aa18.63■□□□□ 0.57
TRIM28-207ENST00000597136 POLA2Q14181 598 aa18.62■□□□□ 0.57
TRIM28-207ENST00000597136 SSH3Q8TE77 659 aa18.62■□□□□ 0.57
TRIM28-207ENST00000597136 DBNDD1Q9H9R9 158 aa18.62■□□□□ 0.57
TRIM28-207ENST00000597136 KCNQ5Q9NR82 932 aa18.62■□□□□ 0.57
TRIM28-207ENST00000597136 LEMD3Q9Y2U8 911 aa18.62■□□□□ 0.57
TRIM28-207ENST00000597136 ZNF541Q9H0D2 1346 aa18.62■□□□□ 0.57
TRIM28-207ENST00000597136 YDJCA8MPS7 323 aa18.61■□□□□ 0.57
TRIM28-207ENST00000597136 FZD9O00144 591 aa18.61■□□□□ 0.57
TRIM28-207ENST00000597136 SIRT2Q8IXJ6 389 aa18.61■□□□□ 0.57
TRIM28-207ENST00000597136 RPAP2Q8IXW5 612 aaPredicted RBP18.61■□□□□ 0.57
TRIM28-207ENST00000597136 VGLL2Q8N8G2 317 aa18.61■□□□□ 0.57
TRIM28-207ENST00000597136 EYA3Q99504 573 aa18.61■□□□□ 0.57
TRIM28-207ENST00000597136 MROH5Q6ZUA9 1318 aa18.61■□□□□ 0.57
TRIM28-207ENST00000597136 DDNO94850 711 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-207ENST00000597136 METTL24Q5JXM2 366 aa18.6■□□□□ 0.57
TRIM28-207ENST00000597136 NIM1KQ8IY84 436 aa18.6■□□□□ 0.57
TRIM28-207ENST00000597136 ZNF784Q8NCA9 323 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-207ENST00000597136 CCDC136Q96JN2 1154 aa18.6■□□□□ 0.57
TRIM28-207ENST00000597136 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-207ENST00000597136 IRS2Q9Y4H2 1338 aa18.6■□□□□ 0.57
TRIM28-207ENST00000597136 KCNJ4P48050 445 aa18.59■□□□□ 0.57
TRIM28-207ENST00000597136 ZNRF3Q9ULT6 936 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms