RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 CCDC152Q4G0S7 254 aa30.85■■■□□ 2.53
LSM4-202ENST00000593564 PDE8AO60658 829 aa30.84■■■□□ 2.53
LSM4-202ENST00000593564 GRM1Q13255 1194 aa30.84■■■□□ 2.53
LSM4-202ENST00000593564 TSPYL6Q8N831 410 aa30.84■■■□□ 2.53
LSM4-202ENST00000593564 HHIPL1Q96JK4 782 aa30.84■■■□□ 2.53
LSM4-202ENST00000593564 RTL9Q8NET4 1388 aa30.83■■■□□ 2.53
LSM4-202ENST00000593564 DOK7Q18PE1 504 aa30.83■■■□□ 2.53
LSM4-202ENST00000593564 ZC3H12CQ9C0D7 883 aaKnown RBP30.82■■■□□ 2.52
LSM4-202ENST00000593564 UFL1O94874 794 aa30.81■■■□□ 2.52
LSM4-202ENST00000593564 MAP2K2P36507 400 aa30.81■■■□□ 2.52
LSM4-202ENST00000593564 SAMD7Q7Z3H4 446 aa30.81■■■□□ 2.52
LSM4-202ENST00000593564 BEGAINQ9BUH8 593 aa30.81■■■□□ 2.52
LSM4-202ENST00000593564 KCNQ5Q9NR82 932 aa30.81■■■□□ 2.52
LSM4-202ENST00000593564 MAP3K2Q9Y2U5 619 aa30.81■■■□□ 2.52
LSM4-202ENST00000593564 CCDC27Q2M243 656 aa30.8■■■□□ 2.52
LSM4-202ENST00000593564 JARID2Q92833 1246 aaPredicted RBP30.8■■■□□ 2.52
LSM4-202ENST00000593564 ZNF408Q9H9D4 720 aa30.8■■■□□ 2.52
LSM4-202ENST00000593564 ANKIB1Q9P2G1 1089 aa30.8■■■□□ 2.52
LSM4-202ENST00000593564 GGA1Q9UJY5 639 aa30.8■■■□□ 2.52
LSM4-202ENST00000593564 CCDC184Q52MB2 194 aa30.79■■■□□ 2.52
LSM4-202ENST00000593564 KSR2Q6VAB6 950 aa30.79■■■□□ 2.52
LSM4-202ENST00000593564 TSR2Q969E8 191 aaKnown RBP30.79■■■□□ 2.52
LSM4-202ENST00000593564 AOC2O75106 756 aa30.78■■■□□ 2.52
LSM4-202ENST00000593564 TBC1D10BQ4KMP7 808 aaPredicted RBP30.78■■■□□ 2.52
LSM4-202ENST00000593564 USP48Q86UV5 1035 aa30.78■■■□□ 2.52
LSM4-202ENST00000593564 CCDC85AQ96PX6 553 aaPredicted RBP30.78■■■□□ 2.52
LSM4-202ENST00000593564 PI4KAP2A4QPH2 592 aa30.77■■■□□ 2.52
LSM4-202ENST00000593564 EGFRP00533 1210 aa30.77■■■□□ 2.52
LSM4-202ENST00000593564 VIL1P09327 827 aaKnown RBP30.77■■■□□ 2.52
LSM4-202ENST00000593564 ANKRD18AQ8IVF6 992 aa30.77■■■□□ 2.52
LSM4-202ENST00000593564 PI4KAP1Q8N8J0 262 aa30.77■■■□□ 2.52
LSM4-202ENST00000593564 STK31Q9BXU1 1019 aa30.77■■■□□ 2.52
LSM4-202ENST00000593564 IGKV5-2P06315 115 aa30.76■■■□□ 2.51
LSM4-202ENST00000593564 WWC1Q8IX03 1113 aa30.75■■■□□ 2.51
LSM4-202ENST00000593564 XDHP47989 1333 aa30.74■■■□□ 2.51
LSM4-202ENST00000593564 SCN9AQ15858 1988 aa30.74■■■□□ 2.51
LSM4-202ENST00000593564 G3V3G9 751 aa30.74■■■□□ 2.51
LSM4-202ENST00000593564 CTSWP56202 376 aa30.74■■■□□ 2.51
LSM4-202ENST00000593564 DCAF8Q5TAQ9 597 aa30.74■■■□□ 2.51
LSM4-202ENST00000593564 KRT26Q7Z3Y9 468 aa30.74■■■□□ 2.51
LSM4-202ENST00000593564 ZNF609O15014 1411 aa30.73■■■□□ 2.51
LSM4-202ENST00000593564 NEXNQ0ZGT2 675 aa30.73■■■□□ 2.51
LSM4-202ENST00000593564 RBM26Q5T8P6 1007 aaKnown RBP30.73■■■□□ 2.51
LSM4-202ENST00000593564 CDC5LQ99459 802 aaKnown RBP30.73■■■□□ 2.51
LSM4-202ENST00000593564 KIF4BQ2VIQ3 1234 aa30.72■■■□□ 2.51
LSM4-202ENST00000593564 TWISTNBQ3B726 338 aaPredicted RBP30.72■■■□□ 2.51
LSM4-202ENST00000593564 NCBP3Q53F19 620 aaKnown RBP30.72■■■□□ 2.51
LSM4-202ENST00000593564 DCPSQ96C86 337 aaKnown RBP30.72■■■□□ 2.51
LSM4-202ENST00000593564 IL16Q14005 1332 aa30.72■■■□□ 2.51
LSM4-202ENST00000593564 ATP2B4P23634 1241 aa30.71■■■□□ 2.51
LSM4-202ENST00000593564 DLK2Q6UY11 383 aa30.71■■■□□ 2.51
LSM4-202ENST00000593564 TTLL11Q8NHH1 800 aa30.71■■■□□ 2.51
LSM4-202ENST00000593564 CA12O43570 354 aa30.7■■■□□ 2.51
LSM4-202ENST00000593564 BRPF1P55201 1214 aaPredicted RBP30.7■■■□□ 2.51
LSM4-202ENST00000593564 NEURL1BA8MQ27 555 aa30.69■■■□□ 2.5
LSM4-202ENST00000593564 HUNKP57058 714 aa30.69■■■□□ 2.5
LSM4-202ENST00000593564 CWF19L2Q2TBE0 894 aaKnown RBP30.69■■■□□ 2.5
LSM4-202ENST00000593564 RSBN1LQ6PCB5 846 aaPredicted RBP30.69■■■□□ 2.5
LSM4-202ENST00000593564 AGBL3Q8NEM8 1001 aa30.69■■■□□ 2.5
LSM4-202ENST00000593564 ADM5C9JUS6 153 aa30.68■■■□□ 2.5
LSM4-202ENST00000593564 ZNF280AP59817 542 aaPredicted RBP30.68■■■□□ 2.5
LSM4-202ENST00000593564 G2E3Q7L622 706 aa30.68■■■□□ 2.5
LSM4-202ENST00000593564 GREM2Q9H772 168 aa30.68■■■□□ 2.5
LSM4-202ENST00000593564 BSDC1Q9NW68 430 aaPredicted RBP30.68■■■□□ 2.5
LSM4-202ENST00000593564 SLC4A2P04920 1241 aa30.67■■■□□ 2.5
LSM4-202ENST00000593564 NOGQ13253 232 aa30.67■■■□□ 2.5
LSM4-202ENST00000593564 GBA2Q9HCG7 927 aaPredicted RBP30.67■■■□□ 2.5
LSM4-202ENST00000593564 GGA3Q9NZ52 723 aa30.67■■■□□ 2.5
LSM4-202ENST00000593564 PODNQ7Z5L7 613 aa30.66■■■□□ 2.5
LSM4-202ENST00000593564 TSKSQ9UJT2 592 aa30.66■■■□□ 2.5
LSM4-202ENST00000593564 H7C1W4 665 aa30.65■■■□□ 2.5
LSM4-202ENST00000593564 SULF1Q8IWU6 871 aa30.65■■■□□ 2.5
LSM4-202ENST00000593564 C2orf69Q8N8R5 385 aa30.65■■■□□ 2.5
LSM4-202ENST00000593564 ABHD8Q96I13 439 aa30.65■■■□□ 2.5
LSM4-202ENST00000593564 GMLQ99445 158 aa30.65■■■□□ 2.5
LSM4-202ENST00000593564 MINPP1Q9UNW1 487 aa30.65■■■□□ 2.5
LSM4-202ENST00000593564 UBE3BQ7Z3V4 1068 aa30.64■■■□□ 2.5
LSM4-202ENST00000593564 POLR2AP24928 1970 aaKnown RBP30.64■■■□□ 2.5
LSM4-202ENST00000593564 MED23Q9ULK4 1368 aa30.64■■■□□ 2.5
LSM4-202ENST00000593564 PSME4Q14997 1843 aa30.63■■■□□ 2.49
LSM4-202ENST00000593564 FLIIQ13045 1269 aa30.63■■■□□ 2.49
LSM4-202ENST00000593564 RGMBQ6NW40 437 aa30.63■■■□□ 2.49
LSM4-202ENST00000593564 ASTN2O75129 1339 aaPredicted RBP30.63■■■□□ 2.49
LSM4-202ENST00000593564 MYH3P11055 1940 aa30.63■■■□□ 2.49
LSM4-202ENST00000593564 USP17L3A6NCW0 530 aa30.62■■■□□ 2.49
LSM4-202ENST00000593564 USP17L4A6NCW7 530 aa30.62■■■□□ 2.49
LSM4-202ENST00000593564 USP17L1Q7RTZ2 530 aa30.62■■■□□ 2.49
LSM4-202ENST00000593564 PLA2G12BQ9BX93 195 aa30.62■■■□□ 2.49
LSM4-202ENST00000593564 MRS2Q9HD23 443 aa30.62■■■□□ 2.49
LSM4-202ENST00000593564 WTIPA6NIX2 430 aaPredicted RBP30.61■■■□□ 2.49
LSM4-202ENST00000593564 USP17L8P0C7I0 530 aa30.61■■■□□ 2.49
LSM4-202ENST00000593564 GCKRQ14397 625 aa30.61■■■□□ 2.49
LSM4-202ENST00000593564 ZIC5Q96T25 663 aa30.61■■■□□ 2.49
LSM4-202ENST00000593564 FANCIQ9NVI1 1328 aa30.61■■■□□ 2.49
LSM4-202ENST00000593564 CCT4P50991 539 aaKnown RBP30.6■■■□□ 2.49
LSM4-202ENST00000593564 SCARF1Q14162 830 aa30.6■■■□□ 2.49
LSM4-202ENST00000593564 FAM155AB1AL88 458 aaPredicted RBP30.59■■■□□ 2.49
LSM4-202ENST00000593564 CCDC102AQ96A19 550 aa30.59■■■□□ 2.49
LSM4-202ENST00000593564 CDCA5Q96FF9 252 aa30.59■■■□□ 2.49
LSM4-202ENST00000593564 MYOZ2Q9NPC6 264 aa30.59■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms