RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	AMOTL2	Q9Y2J4	779 aa		11.21	□□□□□ -0.61
PPP4R1-222	ENST00000582594	COL15A1	P39059	1388 aa		11.21	□□□□□ -0.61
PPP4R1-222	ENST00000582594	PIK3C2A	O00443	1686 aa		11.21	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ADD1	P35611	737 aa	Known RBP	11.21	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ERCC6L	Q2NKX8	1250 aa		11.21	□□□□□ -0.62
PPP4R1-222	ENST00000582594	FSIP1	Q8NA03	581 aa		11.21	□□□□□ -0.62
PPP4R1-222	ENST00000582594	DNAJC2	Q99543	621 aa	Known RBP	11.21	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ZNF446	Q9NWS9	450 aa		11.21	□□□□□ -0.62
PPP4R1-222	ENST00000582594	DBF4	Q9UBU7	674 aa	Predicted RBP	11.21	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NEMF	O60524	1076 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ME1	P48163	572 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	SNW1	Q13573	536 aa	Known RBP	11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NBPF6	Q5VWK0	638 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	KSR2	Q6VAB6	950 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NBPF4	Q96M43	638 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	FMNL2	Q96PY5	1086 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	TMEM2	Q9UHN6	1383 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	PTPRU	Q92729	1446 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	GRM8	O00222	908 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	SMC2	O95347	1197 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	APOBR	Q0VD83	1088 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	SLFNL1	Q499Z3	407 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	SYT10	Q6XYQ8	523 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NCOA5	Q9HCD5	579 aa	Known RBP	11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	HMG20B	Q9P0W2	317 aa		11.2	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ALDH1L1	O75891	902 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	CAVIN2	O95810	425 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	TMC6	Q7Z403	805 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	LRRC59	Q96AG4	307 aa	Known RBP	11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ANO10	Q9NW15	660 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	CEMIP	Q8WUJ3	1361 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	BIN1	O00499	593 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	GIGYF1	O75420	1035 aa	Predicted RBP	11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	CYP21A2	P08686	494 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	CHST3	Q7LGC8	479 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NBPF11	Q86T75	865 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	TRERF1	Q96PN7	1200 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594		A0A1B0GVL5	298 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	PTPDC1	A2A3K4	754 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	TAF3	Q5VWG9	929 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	STOX1	Q6ZVD7	989 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	CEP57L1	Q8IYX8	460 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	SNRK	Q9NRH2	765 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	RCOR1	Q9UKL0	485 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	TAOK2	Q9UL54	1235 aa		11.19	□□□□□ -0.62
PPP4R1-222	ENST00000582594	TNR	Q92752	1358 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	CTAGE5	O15320	804 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	CTDNEP1	O95476	244 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	E4F1	Q66K89	784 aa	Predicted RBP	11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ISM2	Q6H9L7	571 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NSUN7	Q8NE18	718 aa	Known RBP	11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	SDF4	Q9BRK5	362 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	IFNK	Q9P0W0	207 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594		A0A0G2JLW4	131 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	HOXB7	P09629	217 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	GTF2E1	P29083	439 aa	Predicted RBP	11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	KRT32	Q14532	448 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	EPHA10	Q5JZY3	1008 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	DDX46	Q7L014	1031 aa	Known RBP	11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	PPP1R13B	Q96KQ4	1090 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	XPO4	Q9C0E2	1151 aa	Known RBP	11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	TMEM51	Q9NW97	253 aa		11.18	□□□□□ -0.62
PPP4R1-222	ENST00000582594	FAM160A1	Q05DH4	1040 aa		11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	OTUD7B	Q6GQQ9	843 aa		11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ENGASE	Q8NFI3	743 aa		11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	VGLL3	A8MV65	326 aa		11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	MYL6B	P14649	208 aa		11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	DPCR1	Q3MIW9	517 aa		11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	TSGA10IP	Q3SY00	556 aa		11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ARMCX5	Q6P1M9	558 aa		11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	DBNL	Q9UJU6	430 aa	Known RBP	11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ZNF609	O15014	1411 aa		11.17	□□□□□ -0.62
PPP4R1-222	ENST00000582594	PTPN21	Q16825	1174 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	USPL1	Q5W0Q7	1092 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	RIC3	Q7Z5B4	369 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	LINS1	Q8NG48	757 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	SMARCC2	Q8TAQ2	1214 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	FAM53C	Q9NYF3	392 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	CCDC66	A2RUB6	948 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	CLCN6	P51797	869 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	TFCP2	Q12800	502 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ZRSR1	Q15695	479 aa	Known RBP	11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	HOMER1	Q86YM7	354 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NOL10	Q9BSC4	688 aa	Known RBP	11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	PCDHA7	Q9UN72	937 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	PFKFB2	O60825	505 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NDUFA8	P51970	172 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	GSDMD	P57764	484 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ARHGAP29	Q52LW3	1261 aa		11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ILDR1	Q86SU0	546 aa	Predicted RBP	11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	ZNF396	Q96N95	335 aa	Predicted RBP	11.16	□□□□□ -0.62
PPP4R1-222	ENST00000582594	IGKV5-2	P06315	115 aa		11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	PIP4K2A	P48426	406 aa	Predicted RBP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	IRX5	P78411	483 aa	Predicted RBP	11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	DBNDD2	Q9BQY9	259 aa		11.15	□□□□□ -0.62
PPP4R1-222	ENST00000582594	NAT10	Q9H0A0	1025 aa	Known RBP	11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms