RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 C6orf229H3BNL8 230 aa22.26■■□□□ 1.15
SMG6-214ENST00000573827 RIMBP2O15034 1052 aa22.26■■□□□ 1.15
SMG6-214ENST00000573827 CSF1RP07333 972 aa22.26■■□□□ 1.15
SMG6-214ENST00000573827 ADARB2Q9NS39 739 aaKnown RBP22.26■■□□□ 1.15
SMG6-214ENST00000573827 CLEC11AQ9Y240 323 aa22.26■■□□□ 1.15
SMG6-214ENST00000573827 WTIPA6NIX2 430 aaPredicted RBP22.25■■□□□ 1.15
SMG6-214ENST00000573827 HIRAP54198 1017 aaPredicted RBP22.25■■□□□ 1.15
SMG6-214ENST00000573827 TNIP1Q15025 636 aa22.25■■□□□ 1.15
SMG6-214ENST00000573827 ANKRD18AQ8IVF6 992 aa22.25■■□□□ 1.15
SMG6-214ENST00000573827 PSMD14O00487 310 aa22.24■■□□□ 1.15
SMG6-214ENST00000573827 ECE2O60344 883 aa22.24■■□□□ 1.15
SMG6-214ENST00000573827 UFL1O94874 794 aa22.24■■□□□ 1.15
SMG6-214ENST00000573827 EYA3Q99504 573 aa22.24■■□□□ 1.15
SMG6-214ENST00000573827 BSDC1Q9NW68 430 aaPredicted RBP22.24■■□□□ 1.15
SMG6-214ENST00000573827 PGAP2Q9UHJ9 254 aa22.24■■□□□ 1.15
SMG6-214ENST00000573827 FMR1Q06787 632 aaKnown RBP eCLIP22.23■■□□□ 1.15
SMG6-214ENST00000573827 DOK7Q18PE1 504 aa22.23■■□□□ 1.15
SMG6-214ENST00000573827 CDC5LQ99459 802 aaKnown RBP22.23■■□□□ 1.15
SMG6-214ENST00000573827 GGA1Q9UJY5 639 aa22.23■■□□□ 1.15
SMG6-214ENST00000573827 MINPP1Q9UNW1 487 aa22.23■■□□□ 1.15
SMG6-214ENST00000573827 XDHP47989 1333 aa22.23■■□□□ 1.15
SMG6-214ENST00000573827 SLFN5Q08AF3 891 aa22.22■■□□□ 1.15
SMG6-214ENST00000573827 FAM161AQ3B820 660 aa22.22■■□□□ 1.15
SMG6-214ENST00000573827 TRPM4Q8TD43 1214 aa22.22■■□□□ 1.15
SMG6-214ENST00000573827 DPF2Q92785 391 aa22.22■■□□□ 1.15
SMG6-214ENST00000573827 ANKIB1Q9P2G1 1089 aa22.22■■□□□ 1.15
SMG6-214ENST00000573827 ZBTB12Q9Y330 459 aaPredicted RBP22.22■■□□□ 1.15
SMG6-214ENST00000573827 CNTNAP1P78357 1384 aa22.22■■□□□ 1.15
SMG6-214ENST00000573827 TMEM88BA6NKF7 163 aa22.21■■□□□ 1.15
SMG6-214ENST00000573827 CCER2I3L3R5 266 aa22.21■■□□□ 1.15
SMG6-214ENST00000573827 FOXO4P98177 505 aa22.21■■□□□ 1.15
SMG6-214ENST00000573827 E9PSI1 815 aa22.2■■□□□ 1.14
SMG6-214ENST00000573827 TRMT2AQ8IZ69 625 aaKnown RBP22.2■■□□□ 1.14
SMG6-214ENST00000573827 ZC3H12CQ9C0D7 883 aaKnown RBP22.2■■□□□ 1.14
SMG6-214ENST00000573827 CNOT7Q9UIV1 285 aaKnown RBP22.2■■□□□ 1.14
SMG6-214ENST00000573827 ZNF609O15014 1411 aa22.2■■□□□ 1.14
SMG6-214ENST00000573827 SPEF2Q9C093 1822 aa22.2■■□□□ 1.14
SMG6-214ENST00000573827 EGFRP00533 1210 aa22.19■■□□□ 1.14
SMG6-214ENST00000573827 VIL1P09327 827 aaKnown RBP22.19■■□□□ 1.14
SMG6-214ENST00000573827 ITGA6P23229 1130 aa22.19■■□□□ 1.14
SMG6-214ENST00000573827 EPHA10Q5JZY3 1008 aa22.19■■□□□ 1.14
SMG6-214ENST00000573827 MICALL2Q8IY33 904 aa22.19■■□□□ 1.14
SMG6-214ENST00000573827 MRPL50Q8N5N7 158 aaKnown RBP22.19■■□□□ 1.14
SMG6-214ENST00000573827 CDCA7LQ96GN5 454 aa22.19■■□□□ 1.14
SMG6-214ENST00000573827 BCL2L13Q9BXK5 485 aa22.19■■□□□ 1.14
SMG6-214ENST00000573827 MKRN1Q9UHC7 482 aaKnown RBP22.19■■□□□ 1.14
SMG6-214ENST00000573827 PSME4Q14997 1843 aa22.18■■□□□ 1.14
SMG6-214ENST00000573827 TRAF5O00463 557 aa22.18■■□□□ 1.14
SMG6-214ENST00000573827 ATP2B4P23634 1241 aa22.18■■□□□ 1.14
SMG6-214ENST00000573827 MED23Q9ULK4 1368 aa22.17■■□□□ 1.14
SMG6-214ENST00000573827 RPS12P25398 132 aaKnown RBP22.17■■□□□ 1.14
SMG6-214ENST00000573827 CST9Q5W186 159 aa22.17■■□□□ 1.14
SMG6-214ENST00000573827 ZC3H15Q8WU90 426 aaKnown RBP22.17■■□□□ 1.14
SMG6-214ENST00000573827 ZNF646O15015 1829 aaPredicted RBP22.16■■□□□ 1.14
SMG6-214ENST00000573827 RASSF10A6NK89 507 aa22.16■■□□□ 1.14
SMG6-214ENST00000573827 GRM8O00222 908 aa22.16■■□□□ 1.14
SMG6-214ENST00000573827 ALDH1L1O75891 902 aa22.16■■□□□ 1.14
SMG6-214ENST00000573827 CCT4P50991 539 aaKnown RBP22.16■■□□□ 1.14
SMG6-214ENST00000573827 SSH1Q8WYL5 1049 aa22.16■■□□□ 1.14
SMG6-214ENST00000573827 GMLQ99445 158 aa22.16■■□□□ 1.14
SMG6-214ENST00000573827 IRS2Q9Y4H2 1338 aa22.15■■□□□ 1.14
SMG6-214ENST00000573827 SAMD7Q7Z3H4 446 aa22.15■■□□□ 1.14
SMG6-214ENST00000573827 TXNRD3Q86VQ6 643 aa22.15■■□□□ 1.14
SMG6-214ENST00000573827 KAZALD1Q96I82 304 aa22.15■■□□□ 1.14
SMG6-214ENST00000573827 IGHMBP2P38935 993 aaKnown RBP22.14■■□□□ 1.13
SMG6-214ENST00000573827 VEGFBP49765 207 aa22.14■■□□□ 1.13
SMG6-214ENST00000573827 GLIS2Q9BZE0 524 aaPredicted RBP22.14■■□□□ 1.13
SMG6-214ENST00000573827 TRPM7Q96QT4 1865 aa22.13■■□□□ 1.13
SMG6-214ENST00000573827 UTYO14607 1347 aa22.13■■□□□ 1.13
SMG6-214ENST00000573827 H7C1D1 291 aa22.13■■□□□ 1.13
SMG6-214ENST00000573827 KLRK1P26718 216 aa22.13■■□□□ 1.13
SMG6-214ENST00000573827 PODNQ7Z5L7 613 aa22.13■■□□□ 1.13
SMG6-214ENST00000573827 ZNF280AP59817 542 aaPredicted RBP22.12■■□□□ 1.13
SMG6-214ENST00000573827 RSBN1LQ6PCB5 846 aaPredicted RBP22.12■■□□□ 1.13
SMG6-214ENST00000573827 SRCIN1Q9C0H9 1055 aa22.12■■□□□ 1.13
SMG6-214ENST00000573827 LEMD3Q9Y2U8 911 aa22.12■■□□□ 1.13
SMG6-214ENST00000573827 HSPA1AP0DMV8 641 aaKnown RBP22.11■■□□□ 1.13
SMG6-214ENST00000573827 HSPA1BP0DMV9 641 aaKnown RBP22.11■■□□□ 1.13
SMG6-214ENST00000573827 CHRNDQ07001 517 aa22.11■■□□□ 1.13
SMG6-214ENST00000573827 TBC1D10BQ4KMP7 808 aaPredicted RBP22.11■■□□□ 1.13
SMG6-214ENST00000573827 LMBR1LQ6UX01 489 aa22.11■■□□□ 1.13
SMG6-214ENST00000573827 A0A1B0GUL6 1792 aa22.11■■□□□ 1.13
SMG6-214ENST00000573827 ZNF804BA4D1E1 1349 aa22.1■■□□□ 1.13
SMG6-214ENST00000573827 ANKRD18BA2A2Z9 1011 aa22.1■■□□□ 1.13
SMG6-214ENST00000573827 NBPF7P0C2Y1 421 aaPredicted RBP22.1■■□□□ 1.13
SMG6-214ENST00000573827 SLC4A10Q6U841 1118 aa22.1■■□□□ 1.13
SMG6-214ENST00000573827 DLK2Q6UY11 383 aa22.1■■□□□ 1.13
SMG6-214ENST00000573827 AGBL3Q8NEM8 1001 aa22.1■■□□□ 1.13
SMG6-214ENST00000573827 ANKRD2Q9GZV1 360 aa22.1■■□□□ 1.13
SMG6-214ENST00000573827 PTPRCP08575 1304 aa22.09■■□□□ 1.13
SMG6-214ENST00000573827 SNAP23O00161 211 aa22.09■■□□□ 1.13
SMG6-214ENST00000573827 IFIT5Q13325 482 aaKnown RBP22.09■■□□□ 1.13
SMG6-214ENST00000573827 DACT2Q5SW24 774 aa22.09■■□□□ 1.13
SMG6-214ENST00000573827 SUCLG2Q96I99 432 aa22.09■■□□□ 1.13
SMG6-214ENST00000573827 MPHOSPH8Q99549 860 aa22.09■■□□□ 1.13
SMG6-214ENST00000573827 POLR2AP24928 1970 aaKnown RBP22.08■■□□□ 1.13
SMG6-214ENST00000573827 USP17L3A6NCW0 530 aa22.08■■□□□ 1.13
SMG6-214ENST00000573827 USP17L4A6NCW7 530 aa22.08■■□□□ 1.13
SMG6-214ENST00000573827 DEFB115Q30KQ5 88 aa22.08■■□□□ 1.13
SMG6-214ENST00000573827 CDC37L1Q7L3B6 337 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms