RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 AOC3Q16853 763 aa11.65□□□□□ -0.54
VPS35-206ENST00000565228 ZNF526Q8TF50 670 aaPredicted RBP11.65□□□□□ -0.54
VPS35-206ENST00000565228 RCAN3Q9UKA8 241 aa11.65□□□□□ -0.54
VPS35-206ENST00000565228 LRRFIP2Q9Y608 721 aaKnown RBP11.65□□□□□ -0.54
VPS35-206ENST00000565228 YDJCA8MPS7 323 aa11.64□□□□□ -0.55
VPS35-206ENST00000565228 IARSP41252 1262 aaKnown RBP11.64□□□□□ -0.55
VPS35-206ENST00000565228 TXNRD3Q86VQ6 643 aa11.64□□□□□ -0.55
VPS35-206ENST00000565228 RTKN2Q8IZC4 609 aa11.64□□□□□ -0.55
VPS35-206ENST00000565228 TBC1D16Q8TBP0 767 aa11.64□□□□□ -0.55
VPS35-206ENST00000565228 KCNQ5Q9NR82 932 aa11.64□□□□□ -0.55
VPS35-206ENST00000565228 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.64□□□□□ -0.55
VPS35-206ENST00000565228 FZD9O00144 591 aa11.63□□□□□ -0.55
VPS35-206ENST00000565228 LRRC24Q50LG9 513 aa11.63□□□□□ -0.55
VPS35-206ENST00000565228 ANKRD18AQ8IVF6 992 aa11.63□□□□□ -0.55
VPS35-206ENST00000565228 MPNDQ8N594 471 aa11.63□□□□□ -0.55
VPS35-206ENST00000565228 HELBQ8NG08 1087 aaPredicted RBP11.63□□□□□ -0.55
VPS35-206ENST00000565228 C1orf115Q9H7X2 142 aa11.63□□□□□ -0.55
VPS35-206ENST00000565228 NMRK2Q9NPI5 230 aa11.63□□□□□ -0.55
VPS35-206ENST00000565228 BSDC1Q9NW68 430 aaPredicted RBP11.63□□□□□ -0.55
VPS35-206ENST00000565228 PODXL2Q9NZ53 605 aa11.63□□□□□ -0.55
VPS35-206ENST00000565228 NSFL1CQ9UNZ2 370 aaKnown RBP11.63□□□□□ -0.55
VPS35-206ENST00000565228 KIF3CO14782 793 aa11.62□□□□□ -0.55
VPS35-206ENST00000565228 ZBTB7BO15156 539 aaPredicted RBP11.62□□□□□ -0.55
VPS35-206ENST00000565228 TAF5LO75529 589 aa11.62□□□□□ -0.55
VPS35-206ENST00000565228 DDNO94850 711 aaPredicted RBP11.62□□□□□ -0.55
VPS35-206ENST00000565228 SOGA3Q5TF21 947 aa11.62□□□□□ -0.55
VPS35-206ENST00000565228 CC2D2BQ6DHV5 1058 aa11.62□□□□□ -0.55
VPS35-206ENST00000565228 DPP8Q6V1X1 898 aaPredicted RBP11.62□□□□□ -0.55
VPS35-206ENST00000565228 WDR90Q96KV7 1748 aa11.61□□□□□ -0.55
VPS35-206ENST00000565228 PNMA6EA0A0J9YXQ4 647 aa11.61□□□□□ -0.55
VPS35-206ENST00000565228 ANKRD18BA2A2Z9 1011 aa11.61□□□□□ -0.55
VPS35-206ENST00000565228 RIMBP2O15034 1052 aa11.61□□□□□ -0.55
VPS35-206ENST00000565228 IPO8O15397 1037 aaKnown RBP11.61□□□□□ -0.55
VPS35-206ENST00000565228 PTPN12Q05209 780 aaKnown RBP11.61□□□□□ -0.55
VPS35-206ENST00000565228 CHRNDQ07001 517 aa11.61□□□□□ -0.55
VPS35-206ENST00000565228 KIAA2012Q0VF49 1180 aa11.61□□□□□ -0.55
VPS35-206ENST00000565228 DZIP1LQ8IYY4 767 aaKnown RBP11.61□□□□□ -0.55
VPS35-206ENST00000565228 CDC5LQ99459 802 aaKnown RBP11.61□□□□□ -0.55
VPS35-206ENST00000565228 PA2G4Q9UQ80 394 aaKnown RBP11.61□□□□□ -0.55
VPS35-206ENST00000565228 CHMP3Q9Y3E7 222 aa11.61□□□□□ -0.55
VPS35-206ENST00000565228 RIPOR2Q9Y4F9 1068 aa11.61□□□□□ -0.55
VPS35-206ENST00000565228 SHTN1A0MZ66 631 aa11.6□□□□□ -0.55
VPS35-206ENST00000565228 PPIP5K2O43314 1243 aa11.6□□□□□ -0.55
VPS35-206ENST00000565228 UBTFL1P0CB47 393 aaPredicted RBP11.6□□□□□ -0.55
VPS35-206ENST00000565228 HSPA6P17066 643 aa11.6□□□□□ -0.55
VPS35-206ENST00000565228 IFIT5Q13325 482 aaKnown RBP11.6□□□□□ -0.55
VPS35-206ENST00000565228 DOK7Q18PE1 504 aa11.6□□□□□ -0.55
VPS35-206ENST00000565228 ATG9AQ7Z3C6 839 aa11.6□□□□□ -0.55
VPS35-206ENST00000565228 VGLL2Q8N8G2 317 aa11.6□□□□□ -0.55
VPS35-206ENST00000565228 COG6Q9Y2V7 657 aa11.6□□□□□ -0.55
VPS35-206ENST00000565228 PSME4Q14997 1843 aa11.59□□□□□ -0.55
VPS35-206ENST00000565228 GLTPD2A6NH11 291 aa11.59□□□□□ -0.55
VPS35-206ENST00000565228 UFL1O94874 794 aa11.59□□□□□ -0.55
VPS35-206ENST00000565228 HSP90B1P14625 803 aaKnown RBP11.59□□□□□ -0.55
VPS35-206ENST00000565228 TMC4Q7Z404 712 aa11.59□□□□□ -0.55
VPS35-206ENST00000565228 DBNDD1Q9H9R9 158 aa11.59□□□□□ -0.55
VPS35-206ENST00000565228 C6orf229H3BNL8 230 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 POTEIP0CG38 1075 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 POTEJP0CG39 1038 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 IGHMBP2P38935 993 aaKnown RBP11.58□□□□□ -0.56
VPS35-206ENST00000565228 CXCL9Q07325 125 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 MTX1Q13505 466 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 CCDC57Q2TAC2 916 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 ITPRIPQ8IWB1 547 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 LARGE2Q8N3Y3 721 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 RRAGCQ9HB90 399 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 ANKIB1Q9P2G1 1089 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 XDHP47989 1333 aa11.58□□□□□ -0.56
VPS35-206ENST00000565228 ATP2B4P23634 1241 aa11.57□□□□□ -0.56
VPS35-206ENST00000565228 MVPQ14764 893 aaKnown RBP11.57□□□□□ -0.56
VPS35-206ENST00000565228 LDHAL6AQ6ZMR3 332 aa11.57□□□□□ -0.56
VPS35-206ENST00000565228 SIRT2Q8IXJ6 389 aa11.57□□□□□ -0.56
VPS35-206ENST00000565228 MXD3Q9BW11 206 aa11.57□□□□□ -0.56
VPS35-206ENST00000565228 GGA1Q9UJY5 639 aa11.57□□□□□ -0.56
VPS35-206ENST00000565228 ZC3H4Q9UPT8 1303 aaKnown RBP11.57□□□□□ -0.56
VPS35-206ENST00000565228 ECE2O60344 883 aa11.56□□□□□ -0.56
VPS35-206ENST00000565228 RAD17O75943 681 aa11.56□□□□□ -0.56
VPS35-206ENST00000565228 SCNN1DP51172 638 aa11.56□□□□□ -0.56
VPS35-206ENST00000565228 POLA2Q14181 598 aa11.56□□□□□ -0.56
VPS35-206ENST00000565228 WASHC4Q2M389 1173 aa11.56□□□□□ -0.56
VPS35-206ENST00000565228 GRIPAP1Q4V328 841 aa11.56□□□□□ -0.56
VPS35-206ENST00000565228 MPHOSPH8Q99549 860 aa11.56□□□□□ -0.56
VPS35-206ENST00000565228 ADAMTSL1Q8N6G6 1762 aa11.56□□□□□ -0.56
VPS35-206ENST00000565228 ZNF804BA4D1E1 1349 aa11.56□□□□□ -0.56
VPS35-206ENST00000565228 MED23Q9ULK4 1368 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 EYA2O00167 538 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 GNAI2P04899 355 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 GNAI3P08754 354 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 FGFR2P21802 821 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 RRP1P56182 461 aaKnown RBP11.55□□□□□ -0.56
VPS35-206ENST00000565228 FTSJ3Q8IY81 847 aaKnown RBP11.55□□□□□ -0.56
VPS35-206ENST00000565228 NIM1KQ8IY84 436 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 SUPT20HQ8NEM7 779 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 SIL1Q9H173 461 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 VPS33BQ9H267 617 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 GPBP1L1Q9HC44 474 aaPredicted RBP11.55□□□□□ -0.56
VPS35-206ENST00000565228 COPRSQ9NQ92 184 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 ZBTB40Q9NUA8 1239 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 ZNRF3Q9ULT6 936 aa11.55□□□□□ -0.56
VPS35-206ENST00000565228 ZBTB12Q9Y330 459 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms