RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 CAPNS2Q96L46 248 aa20.28■□□□□ 0.84
CLK3-211ENST00000563297 ZC3H12CQ9C0D7 883 aaKnown RBP20.28■□□□□ 0.84
CLK3-211ENST00000563297 POLR2AP24928 1970 aaKnown RBP20.27■□□□□ 0.84
CLK3-211ENST00000563297 PI4KAP2A4QPH2 592 aa20.27■□□□□ 0.84
CLK3-211ENST00000563297 ECE2O60344 883 aa20.27■□□□□ 0.84
CLK3-211ENST00000563297 CELF2O95319 508 aaKnown RBP20.27■□□□□ 0.84
CLK3-211ENST00000563297 CYP4F22Q6NT55 531 aa20.27■□□□□ 0.84
CLK3-211ENST00000563297 CDC37L1Q7L3B6 337 aa20.27■□□□□ 0.84
CLK3-211ENST00000563297 PI4KAP1Q8N8J0 262 aa20.27■□□□□ 0.84
CLK3-211ENST00000563297 CCDC85AQ96PX6 553 aaPredicted RBP20.27■□□□□ 0.84
CLK3-211ENST00000563297 IGKV5-2P06315 115 aa20.26■□□□□ 0.83
CLK3-211ENST00000563297 ECE1P42892 770 aa20.26■□□□□ 0.83
CLK3-211ENST00000563297 LBX1P52954 281 aa20.26■□□□□ 0.83
CLK3-211ENST00000563297 PAXIP1Q6ZW49 1069 aaPredicted RBP20.26■□□□□ 0.83
CLK3-211ENST00000563297 SAMD7Q7Z3H4 446 aa20.26■□□□□ 0.83
CLK3-211ENST00000563297 SAPCD2Q86UD0 394 aa20.25■□□□□ 0.83
CLK3-211ENST00000563297 STK31Q9BXU1 1019 aa20.25■□□□□ 0.83
CLK3-211ENST00000563297 ANKIB1Q9P2G1 1089 aa20.25■□□□□ 0.83
CLK3-211ENST00000563297 RTL9Q8NET4 1388 aa20.24■□□□□ 0.83
CLK3-211ENST00000563297 UFL1O94874 794 aa20.24■□□□□ 0.83
CLK3-211ENST00000563297 VIL1P09327 827 aaKnown RBP20.24■□□□□ 0.83
CLK3-211ENST00000563297 RPS12P25398 132 aaKnown RBP20.24■□□□□ 0.83
CLK3-211ENST00000563297 GRM1Q13255 1194 aa20.24■□□□□ 0.83
CLK3-211ENST00000563297 TWISTNBQ3B726 338 aaPredicted RBP20.24■□□□□ 0.83
CLK3-211ENST00000563297 TBC1D10BQ4KMP7 808 aaPredicted RBP20.24■□□□□ 0.83
CLK3-211ENST00000563297 G2E3Q7L622 706 aa20.24■□□□□ 0.83
CLK3-211ENST00000563297 GGA1Q9UJY5 639 aa20.24■□□□□ 0.83
CLK3-211ENST00000563297 SCN9AQ15858 1988 aa20.23■□□□□ 0.83
CLK3-211ENST00000563297 EGFRP00533 1210 aa20.23■□□□□ 0.83
CLK3-211ENST00000563297 SLC4A2P04920 1241 aa20.23■□□□□ 0.83
CLK3-211ENST00000563297 HSPA8P11142 646 aaKnown RBP20.23■□□□□ 0.83
CLK3-211ENST00000563297 NCBP3Q53F19 620 aaKnown RBP20.23■□□□□ 0.83
CLK3-211ENST00000563297 USP48Q86UV5 1035 aa20.23■□□□□ 0.83
CLK3-211ENST00000563297 ANKRD18AQ8IVF6 992 aa20.23■□□□□ 0.83
CLK3-211ENST00000563297 IL16Q14005 1332 aa20.23■□□□□ 0.83
CLK3-211ENST00000563297 G3V3G9 751 aa20.22■□□□□ 0.83
CLK3-211ENST00000563297 NEXNQ0ZGT2 675 aa20.22■□□□□ 0.83
CLK3-211ENST00000563297 DCAF8Q5TAQ9 597 aa20.22■□□□□ 0.83
CLK3-211ENST00000563297 DLK2Q6UY11 383 aa20.22■□□□□ 0.83
CLK3-211ENST00000563297 TTLL11Q8NHH1 800 aa20.22■□□□□ 0.83
CLK3-211ENST00000563297 ZNF408Q9H9D4 720 aa20.22■□□□□ 0.83
CLK3-211ENST00000563297 AOC2O75106 756 aa20.21■□□□□ 0.83
CLK3-211ENST00000563297 MAP2K2P36507 400 aa20.21■□□□□ 0.83
CLK3-211ENST00000563297 CTSWP56202 376 aa20.21■□□□□ 0.83
CLK3-211ENST00000563297 CWF19L2Q2TBE0 894 aaKnown RBP20.21■□□□□ 0.83
CLK3-211ENST00000563297 RBM26Q5T8P6 1007 aaKnown RBP20.21■□□□□ 0.83
CLK3-211ENST00000563297 HHIPL1Q96JK4 782 aa20.21■□□□□ 0.83
CLK3-211ENST00000563297 NEURL1BA8MQ27 555 aa20.2■□□□□ 0.82
CLK3-211ENST00000563297 H7C1W4 665 aa20.2■□□□□ 0.82
CLK3-211ENST00000563297 MRS2Q9HD23 443 aa20.2■□□□□ 0.82
CLK3-211ENST00000563297 XDHP47989 1333 aa20.2■□□□□ 0.82
CLK3-211ENST00000563297 WTIPA6NIX2 430 aaPredicted RBP20.19■□□□□ 0.82
CLK3-211ENST00000563297 ATP2B4P23634 1241 aa20.19■□□□□ 0.82
CLK3-211ENST00000563297 CDC5LQ99459 802 aaKnown RBP20.19■□□□□ 0.82
CLK3-211ENST00000563297 GREM2Q9H772 168 aa20.19■□□□□ 0.82
CLK3-211ENST00000563297 THSD7BQ9C0I4 1608 aa20.18■□□□□ 0.82
CLK3-211ENST00000563297 KRT26Q7Z3Y9 468 aa20.18■□□□□ 0.82
CLK3-211ENST00000563297 BEGAINQ9BUH8 593 aa20.18■□□□□ 0.82
CLK3-211ENST00000563297 BSDC1Q9NW68 430 aaPredicted RBP20.18■□□□□ 0.82
CLK3-211ENST00000563297 MINPP1Q9UNW1 487 aa20.18■□□□□ 0.82
CLK3-211ENST00000563297 MYH3P11055 1940 aa20.17■□□□□ 0.82
CLK3-211ENST00000563297 FLIIQ13045 1269 aa20.17■□□□□ 0.82
CLK3-211ENST00000563297 UBE3BQ7Z3V4 1068 aa20.17■□□□□ 0.82
CLK3-211ENST00000563297 DCPSQ96C86 337 aaKnown RBP20.17■□□□□ 0.82
CLK3-211ENST00000563297 SALL2Q9Y467 1007 aaPredicted RBP20.17■□□□□ 0.82
CLK3-211ENST00000563297 CACNA1FO60840 1977 aa20.16■□□□□ 0.82
CLK3-211ENST00000563297 ANP32CO43423 234 aa20.16■□□□□ 0.82
CLK3-211ENST00000563297 VAMP4O75379 141 aa20.16■□□□□ 0.82
CLK3-211ENST00000563297 ZEB1P37275 1124 aaPredicted RBP20.16■□□□□ 0.82
CLK3-211ENST00000563297 KIF4BQ2VIQ3 1234 aa20.16■□□□□ 0.82
CLK3-211ENST00000563297 RSBN1LQ6PCB5 846 aaPredicted RBP20.16■□□□□ 0.82
CLK3-211ENST00000563297 WDR63Q8IWG1 891 aa20.16■□□□□ 0.82
CLK3-211ENST00000563297 AGBL3Q8NEM8 1001 aa20.16■□□□□ 0.82
CLK3-211ENST00000563297 ZNF316A6NFI3 1004 aaPredicted RBP20.15■□□□□ 0.82
CLK3-211ENST00000563297 ZNF280AP59817 542 aaPredicted RBP20.15■□□□□ 0.82
CLK3-211ENST00000563297 GCKRQ14397 625 aa20.15■□□□□ 0.82
CLK3-211ENST00000563297 PODNQ7Z5L7 613 aa20.15■□□□□ 0.82
CLK3-211ENST00000563297 GMLQ99445 158 aa20.15■□□□□ 0.82
CLK3-211ENST00000563297 FANCIQ9NVI1 1328 aa20.15■□□□□ 0.82
CLK3-211ENST00000563297 ASTN2O75129 1339 aaPredicted RBP20.14■□□□□ 0.81
CLK3-211ENST00000563297 ADM5C9JUS6 153 aa20.14■□□□□ 0.81
CLK3-211ENST00000563297 CASP7P55210 303 aa20.14■□□□□ 0.81
CLK3-211ENST00000563297 HUNKP57058 714 aa20.14■□□□□ 0.81
CLK3-211ENST00000563297 DNAAF4Q8WXU2 420 aa20.14■□□□□ 0.81
CLK3-211ENST00000563297 PLA2G12BQ9BX93 195 aa20.14■□□□□ 0.81
CLK3-211ENST00000563297 PSME4Q14997 1843 aa20.13■□□□□ 0.81
CLK3-211ENST00000563297 USP17L3A6NCW0 530 aa20.13■□□□□ 0.81
CLK3-211ENST00000563297 USP17L4A6NCW7 530 aa20.13■□□□□ 0.81
CLK3-211ENST00000563297 CCT4P50991 539 aaKnown RBP20.13■□□□□ 0.81
CLK3-211ENST00000563297 FKBP5Q13451 457 aaPredicted RBP20.13■□□□□ 0.81
CLK3-211ENST00000563297 USP17L1Q7RTZ2 530 aa20.13■□□□□ 0.81
CLK3-211ENST00000563297 GBA2Q9HCG7 927 aaPredicted RBP20.13■□□□□ 0.81
CLK3-211ENST00000563297 GGA3Q9NZ52 723 aa20.13■□□□□ 0.81
CLK3-211ENST00000563297 ZNF609O15014 1411 aa20.12■□□□□ 0.81
CLK3-211ENST00000563297 CSF1RP07333 972 aa20.12■□□□□ 0.81
CLK3-211ENST00000563297 BRPF1P55201 1214 aaPredicted RBP20.12■□□□□ 0.81
CLK3-211ENST00000563297 EXOSC9Q06265 439 aaKnown RBP20.12■□□□□ 0.81
CLK3-211ENST00000563297 SCARF1Q14162 830 aa20.12■□□□□ 0.81
CLK3-211ENST00000563297 C2orf69Q8N8R5 385 aa20.12■□□□□ 0.81
CLK3-211ENST00000563297 LINS1Q8NG48 757 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms