RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 GPC2Q8N158 579 aa12.99□□□□□ -0.33
USP3-207ENST00000558218 GRAPLQ8TC17 118 aaPredicted RBP12.99□□□□□ -0.33
USP3-207ENST00000558218 FAM89AQ96GI7 184 aa12.99□□□□□ -0.33
USP3-207ENST00000558218 SCN4AP35499 1836 aa12.98□□□□□ -0.33
USP3-207ENST00000558218 IRS4O14654 1257 aaPredicted RBP12.98□□□□□ -0.33
USP3-207ENST00000558218 PCCAP05165 728 aaPredicted RBP12.98□□□□□ -0.33
USP3-207ENST00000558218 EIF6P56537 245 aaKnown RBP12.98□□□□□ -0.33
USP3-207ENST00000558218 MPNDQ8N594 471 aa12.98□□□□□ -0.33
USP3-207ENST00000558218 TSR2Q969E8 191 aaKnown RBP12.98□□□□□ -0.33
USP3-207ENST00000558218 CACNA1FO60840 1977 aa12.98□□□□□ -0.33
USP3-207ENST00000558218 NEXNQ0ZGT2 675 aa12.97□□□□□ -0.33
USP3-207ENST00000558218 PNMA8AQ86V59 439 aaPredicted RBP12.97□□□□□ -0.33
USP3-207ENST00000558218 LARGE2Q8N3Y3 721 aa12.97□□□□□ -0.33
USP3-207ENST00000558218 DNAJC5GQ8N7S2 189 aa12.97□□□□□ -0.33
USP3-207ENST00000558218 CWC25Q9NXE8 425 aaPredicted RBP12.97□□□□□ -0.33
USP3-207ENST00000558218 VAMP4O75379 141 aa12.96□□□□□ -0.33
USP3-207ENST00000558218 DPP8Q6V1X1 898 aaPredicted RBP12.96□□□□□ -0.33
USP3-207ENST00000558218 NIM1KQ8IY84 436 aa12.96□□□□□ -0.33
USP3-207ENST00000558218 MYD88Q99836 296 aa12.96□□□□□ -0.33
USP3-207ENST00000558218 TAF1DQ9H5J8 278 aaPredicted RBP12.96□□□□□ -0.33
USP3-207ENST00000558218 MYH16Q9H6N6 1097 aa12.96□□□□□ -0.33
USP3-207ENST00000558218 HACL1Q9UJ83 578 aa12.96□□□□□ -0.33
USP3-207ENST00000558218 MAP3K2Q9Y2U5 619 aa12.96□□□□□ -0.33
USP3-207ENST00000558218 FANCIQ9NVI1 1328 aa12.95□□□□□ -0.34
USP3-207ENST00000558218 LAMB2P55268 1798 aa12.95□□□□□ -0.34
USP3-207ENST00000558218 PI4KAP2A4QPH2 592 aa12.95□□□□□ -0.34
USP3-207ENST00000558218 TCERG1O14776 1098 aaKnown RBP12.95□□□□□ -0.34
USP3-207ENST00000558218 PDE8AO60658 829 aa12.95□□□□□ -0.34
USP3-207ENST00000558218 RPS8P62241 208 aaKnown RBP12.95□□□□□ -0.34
USP3-207ENST00000558218 LDHDQ86WU2 507 aa12.95□□□□□ -0.34
USP3-207ENST00000558218 FAM9BQ8IZU0 186 aa12.95□□□□□ -0.34
USP3-207ENST00000558218 PI4KAP1Q8N8J0 262 aa12.95□□□□□ -0.34
USP3-207ENST00000558218 SCUBE2Q9NQ36 999 aa12.95□□□□□ -0.34
USP3-207ENST00000558218 ZNRF3Q9ULT6 936 aa12.95□□□□□ -0.34
USP3-207ENST00000558218 CDHR2Q9BYE9 1310 aa12.94□□□□□ -0.34
USP3-207ENST00000558218 ZNF541Q9H0D2 1346 aa12.94□□□□□ -0.34
USP3-207ENST00000558218 PPIP5K2O43314 1243 aa12.94□□□□□ -0.34
USP3-207ENST00000558218 KIAA2012Q0VF49 1180 aa12.94□□□□□ -0.34
USP3-207ENST00000558218 CCDC152Q4G0S7 254 aa12.94□□□□□ -0.34
USP3-207ENST00000558218 EPHX2P34913 555 aa12.93□□□□□ -0.34
USP3-207ENST00000558218 CELF1Q92879 486 aaKnown RBP12.93□□□□□ -0.34
USP3-207ENST00000558218 TAOK2Q9UL54 1235 aa12.93□□□□□ -0.34
USP3-207ENST00000558218 DDX60Q8IY21 1712 aaKnown RBP12.93□□□□□ -0.34
USP3-207ENST00000558218 IGKV5-2P06315 115 aa12.92□□□□□ -0.34
USP3-207ENST00000558218 LMOD1P29536 600 aaPredicted RBP12.92□□□□□ -0.34
USP3-207ENST00000558218 EXOSC9Q06265 439 aaKnown RBP12.92□□□□□ -0.34
USP3-207ENST00000558218 FLIIQ13045 1269 aa12.92□□□□□ -0.34
USP3-207ENST00000558218 TNIP1Q15025 636 aa12.92□□□□□ -0.34
USP3-207ENST00000558218 AOC3Q16853 763 aa12.92□□□□□ -0.34
USP3-207ENST00000558218 RTL5Q5HYW3 569 aaPredicted RBP12.92□□□□□ -0.34
USP3-207ENST00000558218 KLRG1Q96E93 195 aa12.92□□□□□ -0.34
USP3-207ENST00000558218 PODXL2Q9NZ53 605 aa12.92□□□□□ -0.34
USP3-207ENST00000558218 NSFL1CQ9UNZ2 370 aaKnown RBP12.92□□□□□ -0.34
USP3-207ENST00000558218 SALL2Q9Y467 1007 aaPredicted RBP12.92□□□□□ -0.34
USP3-207ENST00000558218 NEURL1BA8MQ27 555 aa12.91□□□□□ -0.34
USP3-207ENST00000558218 H7C1W4 665 aa12.91□□□□□ -0.34
USP3-207ENST00000558218 MAMSTRQ6ZN01 415 aa12.91□□□□□ -0.34
USP3-207ENST00000558218 G2E3Q7L622 706 aa12.91□□□□□ -0.34
USP3-207ENST00000558218 LINS1Q8NG48 757 aa12.91□□□□□ -0.34
USP3-207ENST00000558218 EYA3Q99504 573 aa12.91□□□□□ -0.34
USP3-207ENST00000558218 ZNF521Q96K83 1311 aa12.9□□□□□ -0.34
USP3-207ENST00000558218 CXCL9Q07325 125 aa12.9□□□□□ -0.34
USP3-207ENST00000558218 FKBP5Q13451 457 aaPredicted RBP12.9□□□□□ -0.34
USP3-207ENST00000558218 WASHC4Q2M389 1173 aa12.9□□□□□ -0.34
USP3-207ENST00000558218 USP50Q70EL3 339 aaPredicted RBP12.9□□□□□ -0.34
USP3-207ENST00000558218 JMYQ8N9B5 988 aa12.9□□□□□ -0.34
USP3-207ENST00000558218 DNAAF4Q8WXU2 420 aa12.9□□□□□ -0.34
USP3-207ENST00000558218 PLA2G12BQ9BX93 195 aa12.9□□□□□ -0.34
USP3-207ENST00000558218 GJA3Q9Y6H8 435 aa12.9□□□□□ -0.34
USP3-207ENST00000558218 TAF1P21675 1872 aa12.89□□□□□ -0.35
USP3-207ENST00000558218 LRRC37AA6NMS7 1700 aa12.89□□□□□ -0.35
USP3-207ENST00000558218 ITGBL1O95965 494 aaPredicted RBP12.89□□□□□ -0.35
USP3-207ENST00000558218 SCNN1DP51172 638 aa12.89□□□□□ -0.35
USP3-207ENST00000558218 GCKRQ14397 625 aa12.89□□□□□ -0.35
USP3-207ENST00000558218 CIAPIN1Q6FI81 312 aa12.89□□□□□ -0.35
USP3-207ENST00000558218 TTLL11Q8NHH1 800 aa12.89□□□□□ -0.35
USP3-207ENST00000558218 ZNF428Q96B54 188 aa12.89□□□□□ -0.35
USP3-207ENST00000558218 CDC5LQ99459 802 aaKnown RBP12.89□□□□□ -0.35
USP3-207ENST00000558218 RTL9Q8NET4 1388 aa12.89□□□□□ -0.35
USP3-207ENST00000558218 COL4A5P29400 1685 aa12.89□□□□□ -0.35
USP3-207ENST00000558218 PASKQ96RG2 1323 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 CEP350Q5VT06 3117 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 C6orf229H3BNL8 230 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 CCER2I3L3R5 266 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 CTSWP56202 376 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 GPSM2P81274 684 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 CWF19L2Q2TBE0 894 aaKnown RBP12.88□□□□□ -0.35
USP3-207ENST00000558218 EAPPQ56P03 285 aaPredicted RBP12.88□□□□□ -0.35
USP3-207ENST00000558218 ANKRD18AQ8IVF6 992 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 CNTROBQ8N137 903 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 TBC1D16Q8TBP0 767 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 DPF2Q92785 391 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 ZC3H12CQ9C0D7 883 aaKnown RBP12.88□□□□□ -0.35
USP3-207ENST00000558218 SEC31BQ9NQW1 1179 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 ADARB2Q9NS39 739 aaKnown RBP12.88□□□□□ -0.35
USP3-207ENST00000558218 BSDC1Q9NW68 430 aaPredicted RBP12.88□□□□□ -0.35
USP3-207ENST00000558218 GPRC5DQ9NZD1 345 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 POLLQ9UGP5 575 aa12.88□□□□□ -0.35
USP3-207ENST00000558218 EPS15P42566 896 aa12.87□□□□□ -0.35
USP3-207ENST00000558218 SLC51AQ86UW1 340 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms