RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 USP17L4A6NCW7 530 aa8.65□□□□□ -1.02
VPS29-210ENST00000552130 ELOAQ14241 798 aaKnown RBP8.65□□□□□ -1.02
VPS29-210ENST00000552130 USP17L2Q6R6M4 530 aa8.65□□□□□ -1.02
VPS29-210ENST00000552130 USP17L1Q7RTZ2 530 aa8.65□□□□□ -1.02
VPS29-210ENST00000552130 ALDH16A1Q8IZ83 802 aa8.65□□□□□ -1.02
VPS29-210ENST00000552130 SIX5Q8N196 739 aa8.65□□□□□ -1.02
VPS29-210ENST00000552130 TP53INP1Q96A56 240 aa8.65□□□□□ -1.02
VPS29-210ENST00000552130 LNPKQ9C0E8 428 aa8.65□□□□□ -1.02
VPS29-210ENST00000552130 DNAJB12Q9NXW2 375 aaKnown RBP8.65□□□□□ -1.02
VPS29-210ENST00000552130 CHMP3Q9Y3E7 222 aa8.65□□□□□ -1.02
VPS29-210ENST00000552130 GRIK5Q16478 980 aa8.64□□□□□ -1.03
VPS29-210ENST00000552130 IER5Q5VY09 327 aa8.64□□□□□ -1.03
VPS29-210ENST00000552130 PSAPL1Q6NUJ1 521 aa8.64□□□□□ -1.03
VPS29-210ENST00000552130 NUDT8Q8WV74 236 aa8.64□□□□□ -1.03
VPS29-210ENST00000552130 GPATCH3Q96I76 525 aa8.64□□□□□ -1.03
VPS29-210ENST00000552130 C2orf49Q9BVC5 232 aaPredicted RBP8.64□□□□□ -1.03
VPS29-210ENST00000552130 TANGO6Q9C0B7 1094 aa8.64□□□□□ -1.03
VPS29-210ENST00000552130 BIN2Q9UBW5 565 aaPredicted RBP8.64□□□□□ -1.03
VPS29-210ENST00000552130 DMGDHQ9UI17 866 aaKnown RBP8.64□□□□□ -1.03
VPS29-210ENST00000552130 TLDC2A0PJX2 215 aa8.63□□□□□ -1.03
VPS29-210ENST00000552130 SSFA2P28290 1259 aa8.63□□□□□ -1.03
VPS29-210ENST00000552130 FBXO33Q7Z6M2 555 aa8.63□□□□□ -1.03
VPS29-210ENST00000552130 TEX2Q8IWB9 1127 aa8.63□□□□□ -1.03
VPS29-210ENST00000552130 STK32AQ8WU08 396 aa8.63□□□□□ -1.03
VPS29-210ENST00000552130 BCL11AQ9H165 835 aa8.63□□□□□ -1.03
VPS29-210ENST00000552130 ZMIZ1Q9ULJ6 1067 aa8.63□□□□□ -1.03
VPS29-210ENST00000552130 GRNP28799 593 aaKnown RBP8.62□□□□□ -1.03
VPS29-210ENST00000552130 SERPINB4P48594 390 aa8.62□□□□□ -1.03
VPS29-210ENST00000552130 IGBP1P78318 339 aa8.62□□□□□ -1.03
VPS29-210ENST00000552130 TAGLNQ01995 201 aaKnown RBP8.62□□□□□ -1.03
VPS29-210ENST00000552130 HIF1AQ16665 826 aa8.62□□□□□ -1.03
VPS29-210ENST00000552130 DMRTC2Q8IXT2 367 aaPredicted RBP8.62□□□□□ -1.03
VPS29-210ENST00000552130 OGFOD1Q8N543 542 aa8.62□□□□□ -1.03
VPS29-210ENST00000552130 DTWD1Q8N5C7 304 aa8.62□□□□□ -1.03
VPS29-210ENST00000552130 TSEN2Q8NCE0 465 aaKnown RBP8.62□□□□□ -1.03
VPS29-210ENST00000552130 KLHL42Q9P2K6 505 aa8.62□□□□□ -1.03
VPS29-210ENST00000552130 hCG_2014768A0A024R1R8 64 aa8.61□□□□□ -1.03
VPS29-210ENST00000552130 PPP1R12BO60237 982 aaPredicted RBP8.61□□□□□ -1.03
VPS29-210ENST00000552130 MSL1Q68DK7 614 aa8.61□□□□□ -1.03
VPS29-210ENST00000552130 SDE2Q6IQ49 451 aa8.61□□□□□ -1.03
VPS29-210ENST00000552130 GAS2L2Q8NHY3 880 aa8.61□□□□□ -1.03
VPS29-210ENST00000552130 PIK3R5Q8WYR1 880 aa8.61□□□□□ -1.03
VPS29-210ENST00000552130 RNF112Q9ULX5 631 aa8.61□□□□□ -1.03
VPS29-210ENST00000552130 ATAD2Q6PL18 1390 aa8.61□□□□□ -1.03
VPS29-210ENST00000552130 ATP9BO43861 1147 aa8.6□□□□□ -1.03
VPS29-210ENST00000552130 TBC1D8BQ0IIM8 1120 aa8.6□□□□□ -1.03
VPS29-210ENST00000552130 CCINQ13939 588 aa8.6□□□□□ -1.03
VPS29-210ENST00000552130 PTPROQ16827 1216 aa8.6□□□□□ -1.03
VPS29-210ENST00000552130 EGFLAMQ63HQ2 1017 aa8.6□□□□□ -1.03
VPS29-210ENST00000552130 FBXO11Q86XK2 927 aa8.6□□□□□ -1.03
VPS29-210ENST00000552130 BCS1LQ9Y276 419 aa8.6□□□□□ -1.03
VPS29-210ENST00000552130 RGS9O75916 674 aaPredicted RBP8.59□□□□□ -1.03
VPS29-210ENST00000552130 HDLBPQ00341 1268 aaKnown RBP8.59□□□□□ -1.03
VPS29-210ENST00000552130 HSP90AB4PQ58FF6 505 aa8.59□□□□□ -1.03
VPS29-210ENST00000552130 MORC4Q8TE76 937 aa8.59□□□□□ -1.03
VPS29-210ENST00000552130 WFDC12Q8WWY7 111 aa8.59□□□□□ -1.03
VPS29-210ENST00000552130 LPIN3Q9BQK8 851 aa8.59□□□□□ -1.03
VPS29-210ENST00000552130 IGFLR1Q9H665 355 aa8.59□□□□□ -1.03
VPS29-210ENST00000552130 FRRS1LQ9P0K9 344 aa8.59□□□□□ -1.03
VPS29-210ENST00000552130 MKRN1Q9UHC7 482 aaKnown RBP8.59□□□□□ -1.03
VPS29-210ENST00000552130 USP21Q9UK80 565 aa8.59□□□□□ -1.03
VPS29-210ENST00000552130 TGFBR3LH3BV60 316 aa8.58□□□□□ -1.04
VPS29-210ENST00000552130 MAP3K6O95382 1288 aa8.58□□□□□ -1.04
VPS29-210ENST00000552130 NFKB1P19838 968 aa8.58□□□□□ -1.04
VPS29-210ENST00000552130 NOS3P29474 1203 aa8.58□□□□□ -1.04
VPS29-210ENST00000552130 TTC9Q92623 222 aa8.58□□□□□ -1.04
VPS29-210ENST00000552130 VTI1AQ96AJ9 217 aa8.58□□□□□ -1.04
VPS29-210ENST00000552130 NOVA2Q9UNW9 492 aaKnown RBP8.58□□□□□ -1.04
VPS29-210ENST00000552130 KRTAP4-8A0A0G2JLE6 195 aa8.57□□□□□ -1.04
VPS29-210ENST00000552130 ZBTB42B2RXF5 422 aa8.57□□□□□ -1.04
VPS29-210ENST00000552130 SCAMP3O14828 347 aaKnown RBP8.57□□□□□ -1.04
VPS29-210ENST00000552130 SETQ01105 290 aaPredicted RBP8.57□□□□□ -1.04
VPS29-210ENST00000552130 RTN1Q16799 776 aa8.57□□□□□ -1.04
VPS29-210ENST00000552130 CCDC144BQ3MJ40 725 aa8.57□□□□□ -1.04
VPS29-210ENST00000552130 KANK4Q5T7N3 995 aaPredicted RBP8.57□□□□□ -1.04
VPS29-210ENST00000552130 C9orf131Q5VYM1 1079 aa8.57□□□□□ -1.04
VPS29-210ENST00000552130 DHX38Q92620 1227 aaKnown RBP8.57□□□□□ -1.04
VPS29-210ENST00000552130 KCNB2Q92953 911 aa8.57□□□□□ -1.04
VPS29-210ENST00000552130 SPACA7Q96KW9 195 aa8.57□□□□□ -1.04
VPS29-210ENST00000552130 MAGEC2Q9UBF1 373 aaPredicted RBP8.57□□□□□ -1.04
VPS29-210ENST00000552130 A0A0U1RQG5 324 aaPredicted RBP8.56□□□□□ -1.04
VPS29-210ENST00000552130 PLAURQ03405 335 aa8.56□□□□□ -1.04
VPS29-210ENST00000552130 TRPM4Q8TD43 1214 aa8.56□□□□□ -1.04
VPS29-210ENST00000552130 BACH2Q9BYV9 841 aa8.56□□□□□ -1.04
VPS29-210ENST00000552130 C11orf16Q9NQ32 467 aa8.56□□□□□ -1.04
VPS29-210ENST00000552130 TBX22Q9Y458 520 aa8.56□□□□□ -1.04
VPS29-210ENST00000552130 PEX14O75381 377 aa8.55□□□□□ -1.04
VPS29-210ENST00000552130 MAP4K4O95819 1239 aaPredicted RBP8.55□□□□□ -1.04
VPS29-210ENST00000552130 IBSPP21815 317 aaPredicted RBP8.55□□□□□ -1.04
VPS29-210ENST00000552130 IREB2P48200 963 aaKnown RBP8.55□□□□□ -1.04
VPS29-210ENST00000552130 PCSK7Q16549 785 aa8.55□□□□□ -1.04
VPS29-210ENST00000552130 IGF2-ASQ6U949 168 aa8.55□□□□□ -1.04
VPS29-210ENST00000552130 FAM35AQ86V20 835 aa8.55□□□□□ -1.04
VPS29-210ENST00000552130 SCG3Q8WXD2 468 aaKnown RBP8.55□□□□□ -1.04
VPS29-210ENST00000552130 MEGF10Q96KG7 1140 aa8.55□□□□□ -1.04
VPS29-210ENST00000552130 PNMA5Q96PV4 448 aa8.55□□□□□ -1.04
VPS29-210ENST00000552130 ZFATQ9P243 1243 aa8.55□□□□□ -1.04
VPS29-210ENST00000552130 PRKAG2Q9UGJ0 569 aa8.55□□□□□ -1.04
VPS29-210ENST00000552130 MAFGO15525 162 aa8.54□□□□□ -1.04
VPS29-210ENST00000552130 PARNO95453 639 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms