RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 COL4A5P29400 1685 aa16.74■□□□□ 0.27
DDX55-213ENST00000545042 KIF16BQ96L93 1317 aa16.73■□□□□ 0.27
DDX55-213ENST00000545042 DUOX1Q9NRD9 1551 aa16.73■□□□□ 0.27
DDX55-213ENST00000545042 RIMBP2O15034 1052 aa16.73■□□□□ 0.27
DDX55-213ENST00000545042 HSPA6P17066 643 aa16.73■□□□□ 0.27
DDX55-213ENST00000545042 RARSP54136 660 aaKnown RBP16.73■□□□□ 0.27
DDX55-213ENST00000545042 FOXO4P98177 505 aa16.73■□□□□ 0.27
DDX55-213ENST00000545042 IFIT5Q13325 482 aaKnown RBP16.73■□□□□ 0.27
DDX55-213ENST00000545042 TNIP1Q15025 636 aa16.73■□□□□ 0.27
DDX55-213ENST00000545042 API5Q9BZZ5 524 aaKnown RBP16.73■□□□□ 0.27
DDX55-213ENST00000545042 NOB1Q9ULX3 412 aaKnown RBP16.73■□□□□ 0.27
DDX55-213ENST00000545042 SCN4AP35499 1836 aa16.73■□□□□ 0.27
DDX55-213ENST00000545042 ATP2B4P23634 1241 aa16.72■□□□□ 0.27
DDX55-213ENST00000545042 CCDC57Q2TAC2 916 aa16.72■□□□□ 0.27
DDX55-213ENST00000545042 TAF7LQ5H9L4 462 aa16.72■□□□□ 0.27
DDX55-213ENST00000545042 CIAPIN1Q6FI81 312 aa16.72■□□□□ 0.27
DDX55-213ENST00000545042 LMBR1LQ6UX01 489 aa16.72■□□□□ 0.27
DDX55-213ENST00000545042 TAF1DQ9H5J8 278 aaPredicted RBP16.72■□□□□ 0.27
DDX55-213ENST00000545042 MINPP1Q9UNW1 487 aa16.72■□□□□ 0.27
DDX55-213ENST00000545042 ZBED9Q6R2W3 1325 aa16.71■□□□□ 0.27
DDX55-213ENST00000545042 EPHX2P34913 555 aa16.71■□□□□ 0.27
DDX55-213ENST00000545042 CCT4P50991 539 aaKnown RBP16.71■□□□□ 0.27
DDX55-213ENST00000545042 CXCL9Q07325 125 aa16.71■□□□□ 0.27
DDX55-213ENST00000545042 PNMA8AQ86V59 439 aaPredicted RBP16.71■□□□□ 0.27
DDX55-213ENST00000545042 ANKRD2Q9GZV1 360 aa16.71■□□□□ 0.27
DDX55-213ENST00000545042 UTYO14607 1347 aa16.7■□□□□ 0.26
DDX55-213ENST00000545042 IPO8O15397 1037 aaKnown RBP16.7■□□□□ 0.26
DDX55-213ENST00000545042 RAD17O75943 681 aa16.7■□□□□ 0.26
DDX55-213ENST00000545042 NBPF7P0C2Y1 421 aaPredicted RBP16.7■□□□□ 0.26
DDX55-213ENST00000545042 EAPPQ56P03 285 aaPredicted RBP16.7■□□□□ 0.26
DDX55-213ENST00000545042 SUCLG2Q96I99 432 aa16.7■□□□□ 0.26
DDX55-213ENST00000545042 DBNDD1Q9H9R9 158 aa16.7■□□□□ 0.26
DDX55-213ENST00000545042 LTBP1Q14766 1721 aa16.7■□□□□ 0.26
DDX55-213ENST00000545042 SPEF2Q9C093 1822 aa16.69■□□□□ 0.26
DDX55-213ENST00000545042 ECE2O60344 883 aa16.69■□□□□ 0.26
DDX55-213ENST00000545042 DOK7Q18PE1 504 aa16.69■□□□□ 0.26
DDX55-213ENST00000545042 EPHA10Q5JZY3 1008 aa16.69■□□□□ 0.26
DDX55-213ENST00000545042 LDHDQ86WU2 507 aa16.69■□□□□ 0.26
DDX55-213ENST00000545042 ARHGAP45Q92619 1136 aa16.69■□□□□ 0.26
DDX55-213ENST00000545042 GPR101Q96P66 508 aaPredicted RBP16.69■□□□□ 0.26
DDX55-213ENST00000545042 LEMD3Q9Y2U8 911 aa16.69■□□□□ 0.26
DDX55-213ENST00000545042 YDJCA8MPS7 323 aa16.68■□□□□ 0.26
DDX55-213ENST00000545042 KCNJ4P48050 445 aa16.68■□□□□ 0.26
DDX55-213ENST00000545042 APLP1P51693 650 aa16.68■□□□□ 0.26
DDX55-213ENST00000545042 CHADLQ6NUI6 762 aa16.68■□□□□ 0.26
DDX55-213ENST00000545042 CLEC11AQ9Y240 323 aa16.68■□□□□ 0.26
DDX55-213ENST00000545042 GMPSP49915 693 aaPredicted RBP16.67■□□□□ 0.26
DDX55-213ENST00000545042 SCNN1DP51172 638 aa16.67■□□□□ 0.26
DDX55-213ENST00000545042 USP44Q9H0E7 712 aa16.67■□□□□ 0.26
DDX55-213ENST00000545042 BICC1Q9H694 974 aaKnown RBP16.67■□□□□ 0.26
DDX55-213ENST00000545042 HDAC5Q9UQL6 1122 aa16.67■□□□□ 0.26
DDX55-213ENST00000545042 CHRNDQ07001 517 aa16.66■□□□□ 0.26
DDX55-213ENST00000545042 LDHAL6AQ6ZMR3 332 aa16.66■□□□□ 0.26
DDX55-213ENST00000545042 CNNM1Q9NRU3 951 aa16.66■□□□□ 0.26
DDX55-213ENST00000545042 GPRC5DQ9NZD1 345 aa16.66■□□□□ 0.26
DDX55-213ENST00000545042 MED23Q9ULK4 1368 aa16.65■□□□□ 0.26
DDX55-213ENST00000545042 PSMD14O00487 310 aa16.65■□□□□ 0.26
DDX55-213ENST00000545042 POTEIP0CG38 1075 aa16.65■□□□□ 0.26
DDX55-213ENST00000545042 POTEJP0CG39 1038 aa16.65■□□□□ 0.26
DDX55-213ENST00000545042 EPS15P42566 896 aa16.65■□□□□ 0.26
DDX55-213ENST00000545042 RABL6Q3YEC7 729 aaPredicted RBP16.65■□□□□ 0.26
DDX55-213ENST00000545042 USP50Q70EL3 339 aaPredicted RBP16.65■□□□□ 0.26
DDX55-213ENST00000545042 FRAT1Q92837 279 aaPredicted RBP16.65■□□□□ 0.26
DDX55-213ENST00000545042 KAZALD1Q96I82 304 aa16.65■□□□□ 0.26
DDX55-213ENST00000545042 ADARB2Q9NS39 739 aaKnown RBP16.65■□□□□ 0.26
DDX55-213ENST00000545042 ZNF804BA4D1E1 1349 aa16.65■□□□□ 0.26
DDX55-213ENST00000545042 H7C1D1 291 aa16.64■□□□□ 0.25
DDX55-213ENST00000545042 BCAR3O75815 825 aa16.64■□□□□ 0.25
DDX55-213ENST00000545042 UBTFL1P0CB47 393 aaPredicted RBP16.64■□□□□ 0.25
DDX55-213ENST00000545042 RPS12P25398 132 aaKnown RBP16.64■□□□□ 0.25
DDX55-213ENST00000545042 PODNQ7Z5L7 613 aa16.64■□□□□ 0.25
DDX55-213ENST00000545042 ZNF594Q96JF6 807 aaPredicted RBP16.64■□□□□ 0.25
DDX55-213ENST00000545042 ATF7IPQ6VMQ6 1270 aa16.63■□□□□ 0.25
DDX55-213ENST00000545042 DPF2Q92785 391 aa16.63■□□□□ 0.25
DDX55-213ENST00000545042 ZKSCAN2Q63HK3 967 aa16.62■□□□□ 0.25
DDX55-213ENST00000545042 INTS3Q68E01 1043 aaKnown RBP16.62■□□□□ 0.25
DDX55-213ENST00000545042 ANKRD44Q8N8A2 993 aa16.62■□□□□ 0.25
DDX55-213ENST00000545042 HELBQ8NG08 1087 aaPredicted RBP16.62■□□□□ 0.25
DDX55-213ENST00000545042 COA1Q9GZY4 146 aa16.62■□□□□ 0.25
DDX55-213ENST00000545042 KCNQ5Q9NR82 932 aa16.62■□□□□ 0.25
DDX55-213ENST00000545042 CNOT7Q9UIV1 285 aaKnown RBP16.62■□□□□ 0.25
DDX55-213ENST00000545042 ZBTB12Q9Y330 459 aaPredicted RBP16.62■□□□□ 0.25
DDX55-213ENST00000545042 CEP350Q5VT06 3117 aa16.62■□□□□ 0.25
DDX55-213ENST00000545042 USP17L3A6NCW0 530 aa16.61■□□□□ 0.25
DDX55-213ENST00000545042 USP17L4A6NCW7 530 aa16.61■□□□□ 0.25
DDX55-213ENST00000545042 WTIPA6NIX2 430 aaPredicted RBP16.61■□□□□ 0.25
DDX55-213ENST00000545042 PLIN1O60240 522 aa16.61■□□□□ 0.25
DDX55-213ENST00000545042 TAF5LO75529 589 aa16.61■□□□□ 0.25
DDX55-213ENST00000545042 VIL1P09327 827 aaKnown RBP16.61■□□□□ 0.25
DDX55-213ENST00000545042 TRIM27P14373 513 aa16.61■□□□□ 0.25
DDX55-213ENST00000545042 USP17L1Q7RTZ2 530 aa16.61■□□□□ 0.25
DDX55-213ENST00000545042 MICALL2Q8IY33 904 aa16.61■□□□□ 0.25
DDX55-213ENST00000545042 GNAI3P08754 354 aa16.6■□□□□ 0.25
DDX55-213ENST00000545042 CNTROBQ8N137 903 aa16.6■□□□□ 0.25
DDX55-213ENST00000545042 MROH5Q6ZUA9 1318 aa16.6■□□□□ 0.25
DDX55-213ENST00000545042 MAP1SQ66K74 1059 aaPredicted RBP16.59■□□□□ 0.25
DDX55-213ENST00000545042 RSBN1LQ6PCB5 846 aaPredicted RBP16.59■□□□□ 0.25
DDX55-213ENST00000545042 ZNF804AQ7Z570 1209 aa16.59■□□□□ 0.25
DDX55-213ENST00000545042 AGBL3Q8NEM8 1001 aa16.59■□□□□ 0.25
DDX55-213ENST00000545042 C15orf52Q6ZUT6 534 aaKnown RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms