RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 DPF2Q92785 391 aa18.21■□□□□ 0.51
SNHG1-213ENST00000540725 JARID2Q92833 1246 aaPredicted RBP18.21■□□□□ 0.51
SNHG1-213ENST00000540725 GPR101Q96P66 508 aaPredicted RBP18.21■□□□□ 0.51
SNHG1-213ENST00000540725 PSME4Q14997 1843 aa18.21■□□□□ 0.51
SNHG1-213ENST00000540725 CACNA1FO60840 1977 aa18.2■□□□□ 0.5
SNHG1-213ENST00000540725 PDE8AO60658 829 aa18.2■□□□□ 0.5
SNHG1-213ENST00000540725 LBX1P52954 281 aa18.2■□□□□ 0.5
SNHG1-213ENST00000540725 DOK7Q18PE1 504 aa18.2■□□□□ 0.5
SNHG1-213ENST00000540725 TSR2Q969E8 191 aaKnown RBP18.2■□□□□ 0.5
SNHG1-213ENST00000540725 PODXL2Q9NZ53 605 aa18.2■□□□□ 0.5
SNHG1-213ENST00000540725 MAP3K2Q9Y2U5 619 aa18.2■□□□□ 0.5
SNHG1-213ENST00000540725 RTL9Q8NET4 1388 aa18.19■□□□□ 0.5
SNHG1-213ENST00000540725 HSPA8P11142 646 aaKnown RBP18.19■□□□□ 0.5
SNHG1-213ENST00000540725 CDC37L1Q7L3B6 337 aa18.19■□□□□ 0.5
SNHG1-213ENST00000540725 UFL1O94874 794 aa18.18■□□□□ 0.5
SNHG1-213ENST00000540725 RPS12P25398 132 aaKnown RBP18.18■□□□□ 0.5
SNHG1-213ENST00000540725 CCDC27Q2M243 656 aa18.18■□□□□ 0.5
SNHG1-213ENST00000540725 KSR2Q6VAB6 950 aa18.18■□□□□ 0.5
SNHG1-213ENST00000540725 SAMD7Q7Z3H4 446 aa18.18■□□□□ 0.5
SNHG1-213ENST00000540725 SAPCD2Q86UD0 394 aa18.18■□□□□ 0.5
SNHG1-213ENST00000540725 CCDC85AQ96PX6 553 aaPredicted RBP18.18■□□□□ 0.5
SNHG1-213ENST00000540725 ZC3H12CQ9C0D7 883 aaKnown RBP18.18■□□□□ 0.5
SNHG1-213ENST00000540725 ZNF408Q9H9D4 720 aa18.18■□□□□ 0.5
SNHG1-213ENST00000540725 KCNQ5Q9NR82 932 aa18.18■□□□□ 0.5
SNHG1-213ENST00000540725 ANKIB1Q9P2G1 1089 aa18.18■□□□□ 0.5
SNHG1-213ENST00000540725 PI4KAP2A4QPH2 592 aa18.17■□□□□ 0.5
SNHG1-213ENST00000540725 TBC1D10BQ4KMP7 808 aaPredicted RBP18.17■□□□□ 0.5
SNHG1-213ENST00000540725 PI4KAP1Q8N8J0 262 aa18.17■□□□□ 0.5
SNHG1-213ENST00000540725 STK31Q9BXU1 1019 aa18.17■□□□□ 0.5
SNHG1-213ENST00000540725 GGA1Q9UJY5 639 aa18.17■□□□□ 0.5
SNHG1-213ENST00000540725 IGKV5-2P06315 115 aa18.17■□□□□ 0.5
SNHG1-213ENST00000540725 WWC1Q8IX03 1113 aa18.17■□□□□ 0.5
SNHG1-213ENST00000540725 G3V3G9 751 aa18.16■□□□□ 0.5
SNHG1-213ENST00000540725 AOC2O75106 756 aa18.16■□□□□ 0.5
SNHG1-213ENST00000540725 EGFRP00533 1210 aa18.16■□□□□ 0.5
SNHG1-213ENST00000540725 TWISTNBQ3B726 338 aaPredicted RBP18.16■□□□□ 0.5
SNHG1-213ENST00000540725 DCAF8Q5TAQ9 597 aa18.16■□□□□ 0.5
SNHG1-213ENST00000540725 USP48Q86UV5 1035 aa18.16■□□□□ 0.5
SNHG1-213ENST00000540725 ANKRD18AQ8IVF6 992 aa18.16■□□□□ 0.5
SNHG1-213ENST00000540725 HHIPL1Q96JK4 782 aa18.16■□□□□ 0.5
SNHG1-213ENST00000540725 BEGAINQ9BUH8 593 aa18.16■□□□□ 0.5
SNHG1-213ENST00000540725 XDHP47989 1333 aa18.15■□□□□ 0.5
SNHG1-213ENST00000540725 MAP2K2P36507 400 aa18.15■□□□□ 0.5
SNHG1-213ENST00000540725 CTSWP56202 376 aa18.15■□□□□ 0.5
SNHG1-213ENST00000540725 NEXNQ0ZGT2 675 aa18.15■□□□□ 0.5
SNHG1-213ENST00000540725 IL16Q14005 1332 aa18.14■□□□□ 0.49
SNHG1-213ENST00000540725 VIL1P09327 827 aaKnown RBP18.14■□□□□ 0.49
SNHG1-213ENST00000540725 RBM26Q5T8P6 1007 aaKnown RBP18.14■□□□□ 0.49
SNHG1-213ENST00000540725 KRT26Q7Z3Y9 468 aa18.14■□□□□ 0.49
SNHG1-213ENST00000540725 CWF19L2Q2TBE0 894 aaKnown RBP18.13■□□□□ 0.49
SNHG1-213ENST00000540725 DLK2Q6UY11 383 aa18.13■□□□□ 0.49
SNHG1-213ENST00000540725 G2E3Q7L622 706 aa18.13■□□□□ 0.49
SNHG1-213ENST00000540725 CDC5LQ99459 802 aaKnown RBP18.13■□□□□ 0.49
SNHG1-213ENST00000540725 CASP8AP2Q9UKL3 1982 aa18.12■□□□□ 0.49
SNHG1-213ENST00000540725 ZNF609O15014 1411 aa18.12■□□□□ 0.49
SNHG1-213ENST00000540725 NEURL1BA8MQ27 555 aa18.12■□□□□ 0.49
SNHG1-213ENST00000540725 SLC4A2P04920 1241 aa18.12■□□□□ 0.49
SNHG1-213ENST00000540725 KIF4BQ2VIQ3 1234 aa18.12■□□□□ 0.49
SNHG1-213ENST00000540725 TTLL11Q8NHH1 800 aa18.12■□□□□ 0.49
SNHG1-213ENST00000540725 DCPSQ96C86 337 aaKnown RBP18.12■□□□□ 0.49
SNHG1-213ENST00000540725 MRS2Q9HD23 443 aa18.12■□□□□ 0.49
SNHG1-213ENST00000540725 ATP2B4P23634 1241 aa18.11■□□□□ 0.49
SNHG1-213ENST00000540725 HUNKP57058 714 aa18.11■□□□□ 0.49
SNHG1-213ENST00000540725 NCBP3Q53F19 620 aaKnown RBP18.11■□□□□ 0.49
SNHG1-213ENST00000540725 GREM2Q9H772 168 aa18.11■□□□□ 0.49
SNHG1-213ENST00000540725 ZNF646O15015 1829 aaPredicted RBP18.11■□□□□ 0.49
SNHG1-213ENST00000540725 ADM5C9JUS6 153 aa18.1■□□□□ 0.49
SNHG1-213ENST00000540725 RSBN1LQ6PCB5 846 aaPredicted RBP18.1■□□□□ 0.49
SNHG1-213ENST00000540725 UBE3BQ7Z3V4 1068 aa18.1■□□□□ 0.49
SNHG1-213ENST00000540725 AGBL3Q8NEM8 1001 aa18.1■□□□□ 0.49
SNHG1-213ENST00000540725 BSDC1Q9NW68 430 aaPredicted RBP18.1■□□□□ 0.49
SNHG1-213ENST00000540725 GGA3Q9NZ52 723 aa18.1■□□□□ 0.49
SNHG1-213ENST00000540725 FANCIQ9NVI1 1328 aa18.1■□□□□ 0.49
SNHG1-213ENST00000540725 H7C1W4 665 aa18.09■□□□□ 0.49
SNHG1-213ENST00000540725 BRPF1P55201 1214 aaPredicted RBP18.09■□□□□ 0.49
SNHG1-213ENST00000540725 FLIIQ13045 1269 aa18.09■□□□□ 0.49
SNHG1-213ENST00000540725 TSKSQ9UJT2 592 aa18.09■□□□□ 0.49
SNHG1-213ENST00000540725 MINPP1Q9UNW1 487 aa18.09■□□□□ 0.49
SNHG1-213ENST00000540725 MED23Q9ULK4 1368 aa18.08■□□□□ 0.49
SNHG1-213ENST00000540725 ZNF280AP59817 542 aaPredicted RBP18.08■□□□□ 0.49
SNHG1-213ENST00000540725 GBA2Q9HCG7 927 aaPredicted RBP18.08■□□□□ 0.49
SNHG1-213ENST00000540725 ASTN2O75129 1339 aaPredicted RBP18.08■□□□□ 0.48
SNHG1-213ENST00000540725 USP17L3A6NCW0 530 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 USP17L4A6NCW7 530 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 WTIPA6NIX2 430 aaPredicted RBP18.07■□□□□ 0.48
SNHG1-213ENST00000540725 CA12O43570 354 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 NOGQ13253 232 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 FKBP5Q13451 457 aaPredicted RBP18.07■□□□□ 0.48
SNHG1-213ENST00000540725 GCKRQ14397 625 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 USP17L1Q7RTZ2 530 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 PODNQ7Z5L7 613 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 SULF1Q8IWU6 871 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 C2orf69Q8N8R5 385 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 GMLQ99445 158 aa18.07■□□□□ 0.48
SNHG1-213ENST00000540725 ANP32CO43423 234 aa18.06■□□□□ 0.48
SNHG1-213ENST00000540725 CCT4P50991 539 aaKnown RBP18.06■□□□□ 0.48
SNHG1-213ENST00000540725 DNAAF4Q8WXU2 420 aa18.06■□□□□ 0.48
SNHG1-213ENST00000540725 ABHD8Q96I13 439 aa18.06■□□□□ 0.48
SNHG1-213ENST00000540725 MYH16Q9H6N6 1097 aa18.06■□□□□ 0.48
SNHG1-213ENST00000540725 SALL2Q9Y467 1007 aaPredicted RBP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 131.1 ms