RNA–Protein interactions for RNA: ENST00000537551.5

CHFR-215, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 596 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-215	ENST00000537551	WDR90	Q96KV7	1748 aa		29.29	■■■□□ 2.28
CHFR-215	ENST00000537551	XDH	P47989	1333 aa		29.29	■■■□□ 2.28
CHFR-215	ENST00000537551	RBM46	Q8TBY0	533 aa	Known RBP	29.29	■■■□□ 2.28
CHFR-215	ENST00000537551	SUCLG2	Q96I99	432 aa		29.29	■■■□□ 2.28
CHFR-215	ENST00000537551	MINPP1	Q9UNW1	487 aa		29.29	■■■□□ 2.28
CHFR-215	ENST00000537551	UTY	O14607	1347 aa		29.28	■■■□□ 2.28
CHFR-215	ENST00000537551	DUOX1	Q9NRD9	1551 aa		29.28	■■■□□ 2.28
CHFR-215	ENST00000537551	IQCA1L	A6NCM1	817 aa		29.28	■■■□□ 2.28
CHFR-215	ENST00000537551	CCT4	P50991	539 aa	Known RBP	29.28	■■■□□ 2.28
CHFR-215	ENST00000537551	L3MBTL3	Q96JM7	780 aa	Predicted RBP	29.28	■■■□□ 2.28
CHFR-215	ENST00000537551	GPR101	Q96P66	508 aa	Predicted RBP	29.28	■■■□□ 2.28
CHFR-215	ENST00000537551	ZC3H12C	Q9C0D7	883 aa	Known RBP	29.28	■■■□□ 2.28
CHFR-215	ENST00000537551	BCAR3	O75815	825 aa		29.27	■■■□□ 2.28
CHFR-215	ENST00000537551	CCDC57	Q2TAC2	916 aa		29.27	■■■□□ 2.28
CHFR-215	ENST00000537551		G3V3G9	751 aa		29.26	■■■□□ 2.27
CHFR-215	ENST00000537551	IPO8	O15397	1037 aa	Known RBP	29.26	■■■□□ 2.27
CHFR-215	ENST00000537551	ATP2B4	P23634	1241 aa		29.26	■■■□□ 2.27
CHFR-215	ENST00000537551	TAF7L	Q5H9L4	462 aa		29.26	■■■□□ 2.27
CHFR-215	ENST00000537551	DCAF8	Q5TAQ9	597 aa		29.26	■■■□□ 2.27
CHFR-215	ENST00000537551	ARHGAP45	Q92619	1136 aa		29.26	■■■□□ 2.27
CHFR-215	ENST00000537551	FRAT1	Q92837	279 aa	Predicted RBP	29.26	■■■□□ 2.27
CHFR-215	ENST00000537551	USP44	Q9H0E7	712 aa		29.26	■■■□□ 2.27
CHFR-215	ENST00000537551	DBNDD1	Q9H9R9	158 aa		29.25	■■■□□ 2.27
CHFR-215	ENST00000537551	CXCL9	Q07325	125 aa		29.24	■■■□□ 2.27
CHFR-215	ENST00000537551	DOK7	Q18PE1	504 aa		29.24	■■■□□ 2.27
CHFR-215	ENST00000537551	HACL1	Q9UJ83	578 aa		29.24	■■■□□ 2.27
CHFR-215	ENST00000537551	SPEF2	Q9C093	1822 aa		29.23	■■■□□ 2.27
CHFR-215	ENST00000537551	RAD17	O75943	681 aa		29.23	■■■□□ 2.27
CHFR-215	ENST00000537551	CIAPIN1	Q6FI81	312 aa		29.23	■■■□□ 2.27
CHFR-215	ENST00000537551	KAZALD1	Q96I82	304 aa		29.23	■■■□□ 2.27
CHFR-215	ENST00000537551	BICC1	Q9H694	974 aa	Known RBP	29.23	■■■□□ 2.27
CHFR-215	ENST00000537551	LMOD1	P29536	600 aa	Predicted RBP	29.22	■■■□□ 2.27
CHFR-215	ENST00000537551	TNIP1	Q15025	636 aa		29.22	■■■□□ 2.27
CHFR-215	ENST00000537551	SMC1B	Q8NDV3	1235 aa		29.22	■■■□□ 2.27
CHFR-215	ENST00000537551	ANKRD2	Q9GZV1	360 aa		29.22	■■■□□ 2.27
CHFR-215	ENST00000537551	FSTL1	Q12841	308 aa		29.21	■■■□□ 2.27
CHFR-215	ENST00000537551	ZNF594	Q96JF6	807 aa	Predicted RBP	29.21	■■■□□ 2.27
CHFR-215	ENST00000537551	TAF1D	Q9H5J8	278 aa	Predicted RBP	29.21	■■■□□ 2.27
CHFR-215	ENST00000537551	LTBP1	Q14766	1721 aa		29.2	■■■□□ 2.27
CHFR-215	ENST00000537551	YDJC	A8MPS7	323 aa		29.2	■■■□□ 2.26
CHFR-215	ENST00000537551	ECE2	O60344	883 aa		29.2	■■■□□ 2.26
CHFR-215	ENST00000537551	EPHX2	P34913	555 aa		29.19	■■■□□ 2.26
CHFR-215	ENST00000537551	CHRND	Q07001	517 aa		29.19	■■■□□ 2.26
CHFR-215	ENST00000537551	LDHAL6A	Q6ZMR3	332 aa		29.19	■■■□□ 2.26
CHFR-215	ENST00000537551	CNNM1	Q9NRU3	951 aa		29.19	■■■□□ 2.26
CHFR-215	ENST00000537551	LEMD3	Q9Y2U8	911 aa		29.19	■■■□□ 2.26
CHFR-215	ENST00000537551	KCNJ4	P48050	445 aa		29.18	■■■□□ 2.26
CHFR-215	ENST00000537551	EAPP	Q56P03	285 aa	Predicted RBP	29.18	■■■□□ 2.26
CHFR-215	ENST00000537551	ATF7IP	Q6VMQ6	1270 aa		29.18	■■■□□ 2.26
CHFR-215	ENST00000537551	SCN4A	P35499	1836 aa		29.17	■■■□□ 2.26
CHFR-215	ENST00000537551	WTIP	A6NIX2	430 aa	Predicted RBP	29.17	■■■□□ 2.26
CHFR-215	ENST00000537551	UBTFL1	P0CB47	393 aa	Predicted RBP	29.17	■■■□□ 2.26
CHFR-215	ENST00000537551	TRIM27	P14373	513 aa		29.17	■■■□□ 2.26
CHFR-215	ENST00000537551	RABL6	Q3YEC7	729 aa	Predicted RBP	29.17	■■■□□ 2.26
CHFR-215	ENST00000537551	ANKRD44	Q8N8A2	993 aa		29.17	■■■□□ 2.26
CHFR-215	ENST00000537551	HSPA6	P17066	643 aa		29.16	■■■□□ 2.26
CHFR-215	ENST00000537551	SCNN1D	P51172	638 aa		29.16	■■■□□ 2.26
CHFR-215	ENST00000537551	ZKSCAN2	Q63HK3	967 aa		29.16	■■■□□ 2.26
CHFR-215	ENST00000537551	HELB	Q8NG08	1087 aa	Predicted RBP	29.16	■■■□□ 2.26
CHFR-215	ENST00000537551	CLEC11A	Q9Y240	323 aa		29.16	■■■□□ 2.26
CHFR-215	ENST00000537551	ZNF804B	A4D1E1	1349 aa		29.16	■■■□□ 2.26
CHFR-215	ENST00000537551	POTEI	P0CG38	1075 aa		29.15	■■■□□ 2.26
CHFR-215	ENST00000537551	POTEJ	P0CG39	1038 aa		29.15	■■■□□ 2.26
CHFR-215	ENST00000537551	EPS15	P42566	896 aa		29.15	■■■□□ 2.26
CHFR-215	ENST00000537551	GMPS	P49915	693 aa	Predicted RBP	29.15	■■■□□ 2.26
CHFR-215	ENST00000537551	INTS3	Q68E01	1043 aa	Known RBP	29.15	■■■□□ 2.26
CHFR-215	ENST00000537551	PNMA8A	Q86V59	439 aa	Predicted RBP	29.15	■■■□□ 2.26
CHFR-215	ENST00000537551	CLUAP1	Q96AJ1	413 aa		29.15	■■■□□ 2.26
CHFR-215	ENST00000537551	HDAC5	Q9UQL6	1122 aa		29.15	■■■□□ 2.26
CHFR-215	ENST00000537551	PLIN1	O60240	522 aa		29.14	■■■□□ 2.26
CHFR-215	ENST00000537551	TAF5L	O75529	589 aa		29.14	■■■□□ 2.26
CHFR-215	ENST00000537551	KCNQ5	Q9NR82	932 aa		29.14	■■■□□ 2.26
CHFR-215	ENST00000537551	TNN	Q9UQP3	1299 aa		29.14	■■■□□ 2.26
CHFR-215	ENST00000537551	PSMD14	O00487	310 aa		29.13	■■■□□ 2.25
CHFR-215	ENST00000537551	CHADL	Q6NUI6	762 aa		29.13	■■■□□ 2.25
CHFR-215	ENST00000537551	LDHD	Q86WU2	507 aa		29.13	■■■□□ 2.25
CHFR-215	ENST00000537551	MED23	Q9ULK4	1368 aa		29.13	■■■□□ 2.25
CHFR-215	ENST00000537551	GPRC5D	Q9NZD1	345 aa		29.12	■■■□□ 2.25
CHFR-215	ENST00000537551	MEIS3	Q99687	375 aa		29.11	■■■□□ 2.25
CHFR-215	ENST00000537551	PODN	Q7Z5L7	613 aa		29.1	■■■□□ 2.25
CHFR-215	ENST00000537551	PUS3	Q9BZE2	481 aa	Known RBP	29.1	■■■□□ 2.25
CHFR-215	ENST00000537551	ZBTB12	Q9Y330	459 aa	Predicted RBP	29.1	■■■□□ 2.25
CHFR-215	ENST00000537551	SNAP23	O00161	211 aa		29.09	■■■□□ 2.25
CHFR-215	ENST00000537551	LRRFIP2	Q9Y608	721 aa	Known RBP	29.09	■■■□□ 2.25
CHFR-215	ENST00000537551	GNAI3	P08754	354 aa		29.08	■■■□□ 2.25
CHFR-215	ENST00000537551	TXNRD3	Q86VQ6	643 aa		29.08	■■■□□ 2.25
CHFR-215	ENST00000537551	COA1	Q9GZY4	146 aa		29.08	■■■□□ 2.25
CHFR-215	ENST00000537551	ADARB2	Q9NS39	739 aa	Known RBP	29.08	■■■□□ 2.25
CHFR-215	ENST00000537551	CNOT7	Q9UIV1	285 aa	Known RBP	29.08	■■■□□ 2.25
CHFR-215	ENST00000537551		H7C1D1	291 aa		29.07	■■■□□ 2.24
CHFR-215	ENST00000537551	KLRK1	P26718	216 aa		29.07	■■■□□ 2.24
CHFR-215	ENST00000537551	USP50	Q70EL3	339 aa	Predicted RBP	29.07	■■■□□ 2.24
CHFR-215	ENST00000537551	FTSJ3	Q8IY81	847 aa	Known RBP	29.07	■■■□□ 2.24
CHFR-215	ENST00000537551	VIL1	P09327	827 aa	Known RBP	29.06	■■■□□ 2.24
CHFR-215	ENST00000537551	APLP1	P51693	650 aa		29.06	■■■□□ 2.24
CHFR-215	ENST00000537551	KLHDC4	Q8TBB5	520 aa		29.06	■■■□□ 2.24
CHFR-215	ENST00000537551	DPF2	Q92785	391 aa		29.06	■■■□□ 2.24
CHFR-215	ENST00000537551	RIPOR2	Q9Y4F9	1068 aa		29.06	■■■□□ 2.24
CHFR-215	ENST00000537551	MROH5	Q6ZUA9	1318 aa		29.05	■■■□□ 2.24
CHFR-215	ENST00000537551	USP17L3	A6NCW0	530 aa		29.05	■■■□□ 2.24

Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms