RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 VEGFBP49765 207 aa11.09□□□□□ -0.63
USP48-212ENST00000527823 FUT2Q10981 343 aa11.09□□□□□ -0.63
USP48-212ENST00000527823 RNF166Q96A37 237 aaPredicted RBP11.09□□□□□ -0.63
USP48-212ENST00000527823 ABHD8Q96I13 439 aa11.09□□□□□ -0.63
USP48-212ENST00000527823 RSPH6AQ9H0K4 717 aa11.09□□□□□ -0.63
USP48-212ENST00000527823 TAOK3Q9H2K8 898 aa11.09□□□□□ -0.63
USP48-212ENST00000527823 POLR3EQ9NVU0 708 aa11.09□□□□□ -0.63
USP48-212ENST00000527823 H0YIN7 160 aa11.08□□□□□ -0.64
USP48-212ENST00000527823 HSPA8P11142 646 aaKnown RBP11.08□□□□□ -0.64
USP48-212ENST00000527823 LBX1P52954 281 aa11.08□□□□□ -0.64
USP48-212ENST00000527823 SLC39A6Q13433 755 aa11.08□□□□□ -0.64
USP48-212ENST00000527823 LDHDQ86WU2 507 aa11.08□□□□□ -0.64
USP48-212ENST00000527823 AIDAQ96BJ3 306 aa11.08□□□□□ -0.64
USP48-212ENST00000527823 SLC52A2Q9HAB3 445 aa11.08□□□□□ -0.64
USP48-212ENST00000527823 MOXD2PA6NHM9 499 aa11.07□□□□□ -0.64
USP48-212ENST00000527823 NDUFV2P19404 249 aa11.07□□□□□ -0.64
USP48-212ENST00000527823 DIXDC1Q155Q3 683 aa11.07□□□□□ -0.64
USP48-212ENST00000527823 SH3D19Q5HYK7 790 aa11.07□□□□□ -0.64
USP48-212ENST00000527823 PRR5LQ6MZQ0 368 aa11.07□□□□□ -0.64
USP48-212ENST00000527823 CCDC24Q8N4L8 307 aa11.07□□□□□ -0.64
USP48-212ENST00000527823 HLA-CQ95604 372 aa11.07□□□□□ -0.64
USP48-212ENST00000527823 PDE4DIPQ5VU43 2346 aa11.07□□□□□ -0.64
USP48-212ENST00000527823 ZNF541Q9H0D2 1346 aa11.07□□□□□ -0.64
USP48-212ENST00000527823 COL4A5P29400 1685 aa11.06□□□□□ -0.64
USP48-212ENST00000527823 HOXA2O43364 376 aa11.06□□□□□ -0.64
USP48-212ENST00000527823 ACTN4O43707 911 aaKnown RBP11.06□□□□□ -0.64
USP48-212ENST00000527823 PUS10Q3MIT2 529 aaKnown RBP11.06□□□□□ -0.64
USP48-212ENST00000527823 TBC1D9BQ66K14 1250 aa11.06□□□□□ -0.64
USP48-212ENST00000527823 SULT6B1Q6IMI4 303 aa11.06□□□□□ -0.64
USP48-212ENST00000527823 BICDL1Q6ZP65 573 aa11.06□□□□□ -0.64
USP48-212ENST00000527823 ZNF622Q969S3 477 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP48-212ENST00000527823 TAF1DQ9H5J8 278 aaPredicted RBP11.06□□□□□ -0.64
USP48-212ENST00000527823 TMEM88BA6NKF7 163 aa11.05□□□□□ -0.64
USP48-212ENST00000527823 ITGBL1O95965 494 aaPredicted RBP11.05□□□□□ -0.64
USP48-212ENST00000527823 USP46P62068 366 aa11.05□□□□□ -0.64
USP48-212ENST00000527823 GUCA2AQ02747 115 aa11.05□□□□□ -0.64
USP48-212ENST00000527823 SKIV2LQ15477 1246 aaKnown RBP11.05□□□□□ -0.64
USP48-212ENST00000527823 AKAP4Q5JQC9 854 aa11.05□□□□□ -0.64
USP48-212ENST00000527823 PRPF40BQ6NWY9 871 aaKnown RBP11.05□□□□□ -0.64
USP48-212ENST00000527823 SNED1Q8TER0 1413 aa11.05□□□□□ -0.64
USP48-212ENST00000527823 PRR14Q9BWN1 585 aa11.05□□□□□ -0.64
USP48-212ENST00000527823 LGR6Q9HBX8 967 aa11.05□□□□□ -0.64
USP48-212ENST00000527823 IQCA1LA6NCM1 817 aa11.04□□□□□ -0.64
USP48-212ENST00000527823 RASSF10A6NK89 507 aa11.04□□□□□ -0.64
USP48-212ENST00000527823 CANXP27824 592 aaKnown RBP11.04□□□□□ -0.64
USP48-212ENST00000527823 EIF5P55010 431 aaKnown RBP11.04□□□□□ -0.64
USP48-212ENST00000527823 RIC3Q7Z5B4 369 aa11.04□□□□□ -0.64
USP48-212ENST00000527823 PROCA1Q8NCQ7 364 aaPredicted RBP11.04□□□□□ -0.64
USP48-212ENST00000527823 BRIP1Q9BX63 1249 aa11.04□□□□□ -0.64
USP48-212ENST00000527823 LIMD1Q9UGP4 676 aa11.04□□□□□ -0.64
USP48-212ENST00000527823 LAMB4A4D0S4 1761 aa11.03□□□□□ -0.64
USP48-212ENST00000527823 RNMTO43148 476 aaKnown RBP11.03□□□□□ -0.64
USP48-212ENST00000527823 IL13P35225 146 aa11.03□□□□□ -0.64
USP48-212ENST00000527823 PDE6BP35913 854 aa11.03□□□□□ -0.64
USP48-212ENST00000527823 MMRN1Q13201 1228 aa11.03□□□□□ -0.64
USP48-212ENST00000527823 GOPCQ9HD26 462 aa11.03□□□□□ -0.64
USP48-212ENST00000527823 CLK2P49760 499 aaKnown RBP11.02□□□□□ -0.65
USP48-212ENST00000527823 CSPP1Q1MSJ5 1256 aa11.02□□□□□ -0.65
USP48-212ENST00000527823 GRIPAP1Q4V328 841 aa11.02□□□□□ -0.65
USP48-212ENST00000527823 EAPPQ56P03 285 aaPredicted RBP11.02□□□□□ -0.65
USP48-212ENST00000527823 RSBN1LQ6PCB5 846 aaPredicted RBP11.02□□□□□ -0.65
USP48-212ENST00000527823 CNBD1Q8NA66 436 aa11.02□□□□□ -0.65
USP48-212ENST00000527823 PCMTD1Q96MG8 357 aaPredicted RBP11.02□□□□□ -0.65
USP48-212ENST00000527823 PDZRN3Q9UPQ7 1066 aa11.02□□□□□ -0.65
USP48-212ENST00000527823 PCDHB3Q9Y5E6 796 aa11.02□□□□□ -0.65
USP48-212ENST00000527823 RNF123Q5XPI4 1314 aa11.02□□□□□ -0.65
USP48-212ENST00000527823 HEG1Q9ULI3 1381 aa11.02□□□□□ -0.65
USP48-212ENST00000527823 CASP8AP2Q9UKL3 1982 aa11.01□□□□□ -0.65
USP48-212ENST00000527823 COL3A1P02461 1466 aaPredicted RBP11.01□□□□□ -0.65
USP48-212ENST00000527823 SPTLC1O15269 473 aa11.01□□□□□ -0.65
USP48-212ENST00000527823 SRGNP10124 158 aa11.01□□□□□ -0.65
USP48-212ENST00000527823 STYK1Q6J9G0 422 aa11.01□□□□□ -0.65
USP48-212ENST00000527823 WDR33Q9C0J8 1336 aaKnown RBP11.01□□□□□ -0.65
USP48-212ENST00000527823 CAMTA2O94983 1202 aa11□□□□□ -0.65
USP48-212ENST00000527823 FDX1P10109 184 aa11□□□□□ -0.65
USP48-212ENST00000527823 EPHX2P34913 555 aa11□□□□□ -0.65
USP48-212ENST00000527823 MLLT1Q03111 559 aaPredicted RBP11□□□□□ -0.65
USP48-212ENST00000527823 CCDC93Q567U6 631 aa11□□□□□ -0.65
USP48-212ENST00000527823 MORN1Q5T089 497 aa11□□□□□ -0.65
USP48-212ENST00000527823 MAP1SQ66K74 1059 aaPredicted RBP11□□□□□ -0.65
USP48-212ENST00000527823 C7orf43Q8WVR3 580 aa11□□□□□ -0.65
USP48-212ENST00000527823 CNKSR1Q969H4 720 aa11□□□□□ -0.65
USP48-212ENST00000527823 POLR3GLQ9BT43 218 aa11□□□□□ -0.65
USP48-212ENST00000527823 HACL1Q9UJ83 578 aa11□□□□□ -0.65
USP48-212ENST00000527823 PCDHB15Q9Y5E8 787 aa11□□□□□ -0.65
USP48-212ENST00000527823 A0A087WZG4 1122 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 RGS19P49795 217 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 COPS2P61201 443 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 SOGA3Q5TF21 947 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 BLOC1S3Q6QNY0 202 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 OLFM4Q6UX06 510 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 NYAP1Q6ZVC0 841 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 MASTLQ96GX5 879 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 ZNF277Q9NRM2 450 aaPredicted RBP10.99□□□□□ -0.65
USP48-212ENST00000527823 HCSTQ9UBK5 93 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 PCDHGC3Q9UN70 934 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 TBC1D2BQ9UPU7 963 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 SLC27A5Q9Y2P5 690 aa10.99□□□□□ -0.65
USP48-212ENST00000527823 ZNF330Q9Y3S2 320 aaPredicted RBP10.99□□□□□ -0.65
USP48-212ENST00000527823 HMOX1P09601 288 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms