RNA–Protein interactions for RNA: ENST00000508238.5

UBE2D3-222, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-222	ENST00000508238	ABCC12	Q96J65	1359 aa		10.33	□□□□□ -0.76
UBE2D3-222	ENST00000508238	VEGFA	P15692	232 aa	Predicted RBP	10.32	□□□□□ -0.76
UBE2D3-222	ENST00000508238	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.32	□□□□□ -0.76	2e-9	■■□□□ 12.2
UBE2D3-222	ENST00000508238	FSTL1	Q12841	308 aa		10.32	□□□□□ -0.76
UBE2D3-222	ENST00000508238	NLRP10	Q86W26	655 aa		10.32	□□□□□ -0.76
UBE2D3-222	ENST00000508238	PLBD2	Q8NHP8	589 aa		10.32	□□□□□ -0.76
UBE2D3-222	ENST00000508238	CHMP4A	Q9BY43	222 aa		10.32	□□□□□ -0.76
UBE2D3-222	ENST00000508238	CHPF2	Q9P2E5	772 aa		10.32	□□□□□ -0.76
UBE2D3-222	ENST00000508238	CACNA1S	Q13698	1873 aa		10.32	□□□□□ -0.76
UBE2D3-222	ENST00000508238	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	POTEC	B2RU33	542 aa		10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	RIMBP2	O15034	1052 aa		10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	AIMP1	Q12904	312 aa	Known RBP	10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	TRIM28	Q13263	835 aa	Known RBP	10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ARSI	Q5FYB1	569 aa		10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ANKRD13D	Q6ZTN6	518 aa		10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ZNF710	Q8N1W2	664 aa		10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	NECTIN2	Q92692	538 aa		10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.31	□□□□□ -0.76	3e-7	■■■□□ 17.8
UBE2D3-222	ENST00000508238	NLRP3	Q96P20	1036 aa		10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	PSMD1	Q99460	953 aa		10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	SNED1	Q8TER0	1413 aa		10.31	□□□□□ -0.76
UBE2D3-222	ENST00000508238	APLP1	P51693	650 aa		10.3	□□□□□ -0.76
UBE2D3-222	ENST00000508238	RPGR	Q92834	1020 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-222	ENST00000508238	RBM17	Q96I25	401 aa	Known RBP	10.3	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ANKRD36C	Q5JPF3	1778 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	SNPH	O15079	494 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ANP32C	O43423	234 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ST18	O60284	1047 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	OLFM4	Q6UX06	510 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	WWC1	Q8IX03	1113 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	SYNE4	Q8N205	404 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	SMC1B	Q8NDV3	1235 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ZC3H15	Q8WU90	426 aa	Known RBP	10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ISCA1	Q9BUE6	129 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	TIAM2	Q8IVF5	1701 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	WDR90	Q96KV7	1748 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	SH3TC1	Q8TE82	1336 aa		10.29	□□□□□ -0.76
UBE2D3-222	ENST00000508238	BBOX1	O75936	387 aa		10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	NUDT7	P0C024	238 aa		10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	OSBP	P22059	807 aa		10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	IARS	P41252	1262 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	GPR153	Q6NV75	609 aa		10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	DNAJC5G	Q8N7S2	189 aa		10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	C8orf58	Q8NAV2	365 aa		10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ZSWIM6	Q9HCJ5	1215 aa		10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	MRS2	Q9HD23	443 aa		10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	ZNF277	Q9NRM2	450 aa	Predicted RBP	10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	TRMT112	Q9UI30	125 aa	Known RBP	10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	IL16	Q14005	1332 aa		10.28	□□□□□ -0.76
UBE2D3-222	ENST00000508238	FZD9	O00144	591 aa		10.27	□□□□□ -0.77
UBE2D3-222	ENST00000508238	ELL2	O00472	640 aa	Predicted RBP	10.27	□□□□□ -0.77
UBE2D3-222	ENST00000508238	DDN	O94850	711 aa	Predicted RBP	10.27	□□□□□ -0.77
UBE2D3-222	ENST00000508238	CCDC30	Q5VVM6	783 aa		10.27	□□□□□ -0.77
UBE2D3-222	ENST00000508238	VPS33B	Q9H267	617 aa		10.27	□□□□□ -0.77
UBE2D3-222	ENST00000508238	ATP6V0A2	Q9Y487	856 aa		10.27	□□□□□ -0.77
UBE2D3-222	ENST00000508238	CACNA1F	O60840	1977 aa		10.26	□□□□□ -0.77
UBE2D3-222	ENST00000508238	SCN4A	P35499	1836 aa		10.26	□□□□□ -0.77
UBE2D3-222	ENST00000508238	IQCA1L	A6NCM1	817 aa		10.26	□□□□□ -0.77
UBE2D3-222	ENST00000508238	PPEF1	O14829	653 aa	Predicted RBP	10.26	□□□□□ -0.77
UBE2D3-222	ENST00000508238	HCLS1	P14317	486 aa	Predicted RBP	10.26	□□□□□ -0.77
UBE2D3-222	ENST00000508238	SF3B3	Q15393	1217 aa	Known RBP	10.26	□□□□□ -0.77
UBE2D3-222	ENST00000508238	SP8	Q8IXZ3	490 aa		10.26	□□□□□ -0.77
UBE2D3-222	ENST00000508238	RTFDC1	Q9BY42	306 aa	Predicted RBP	10.26	□□□□□ -0.77
UBE2D3-222	ENST00000508238	ABCC4	O15439	1325 aa		10.26	□□□□□ -0.77
UBE2D3-222	ENST00000508238	DDX46	Q7L014	1031 aa	Known RBP	10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	TMC4	Q7Z404	712 aa		10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	RIC3	Q7Z5B4	369 aa		10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	GPIHBP1	Q8IV16	184 aa		10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	WDR63	Q8IWG1	891 aa		10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	GPC2	Q8N158	579 aa		10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	TSPYL6	Q8N831	410 aa		10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	JDP2	Q8WYK2	163 aa		10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	TMX4	Q9H1E5	349 aa	Predicted RBP	10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	PHAX	Q9H814	394 aa	Known RBP	10.25	□□□□□ -0.77
UBE2D3-222	ENST00000508238	ATP5J2-PTCD1	G3V325	749 aa		10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	DDX58	O95786	925 aa	Known RBP	10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	HSP90B1	P14625	803 aa	Known RBP	10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	GRAP	Q13588	217 aa		10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	CCDC191	Q8NCU4	936 aa		10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	GRAPL	Q8TC17	118 aa	Predicted RBP	10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	FAM89A	Q96GI7	184 aa		10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	ZNF541	Q9H0D2	1346 aa		10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	LAMB2	P55268	1798 aa		10.24	□□□□□ -0.77
UBE2D3-222	ENST00000508238	KSR2	Q6VAB6	950 aa		10.23	□□□□□ -0.77
UBE2D3-222	ENST00000508238	LARGE2	Q8N3Y3	721 aa		10.23	□□□□□ -0.77
UBE2D3-222	ENST00000508238	SUPT20H	Q8NEM7	779 aa		10.23	□□□□□ -0.77
UBE2D3-222	ENST00000508238	TSR2	Q969E8	191 aa	Known RBP	10.23	□□□□□ -0.77
UBE2D3-222	ENST00000508238	METTL22	Q9BUU2	404 aa	Predicted RBP	10.23	□□□□□ -0.77
UBE2D3-222	ENST00000508238	TAF1D	Q9H5J8	278 aa	Predicted RBP	10.23	□□□□□ -0.77
UBE2D3-222	ENST00000508238	PCDHGA10	Q9Y5H3	936 aa		10.23	□□□□□ -0.77
UBE2D3-222	ENST00000508238	TAF1	P21675	1872 aa		10.23	□□□□□ -0.77
UBE2D3-222	ENST00000508238	IRS4	O14654	1257 aa	Predicted RBP	10.22	□□□□□ -0.77
UBE2D3-222	ENST00000508238	TCERG1	O14776	1098 aa	Known RBP	10.22	□□□□□ -0.77
UBE2D3-222	ENST00000508238	PCCA	P05165	728 aa	Predicted RBP	10.22	□□□□□ -0.77
UBE2D3-222	ENST00000508238	EIF6	P56537	245 aa	Known RBP	10.22	□□□□□ -0.77
UBE2D3-222	ENST00000508238	TWISTNB	Q3B726	338 aa	Predicted RBP	10.22	□□□□□ -0.77
UBE2D3-222	ENST00000508238	LDHD	Q86WU2	507 aa		10.22	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms