RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CBFA2T2O43439 604 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 RBM5P52756 815 aaKnown RBP eCLIP18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 TYRO3Q06418 890 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 CHST3Q7LGC8 479 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 DNAJC25Q9H1X3 360 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 ORC3Q9UBD5 711 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 UNC13BO14795 1591 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 GSPT1P15170 499 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 LUZP1Q86V48 1076 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 INTS4Q96HW7 963 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 PAG1Q9NWQ8 432 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 RTL1A6NKG5 1358 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 GADD45BO75293 160 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 TMC6Q7Z403 805 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 USP5P45974 858 aa18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 DZIP1Q86YF9 867 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 ZNF397Q8NF99 534 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 NDUFB9Q9Y6M9 179 aa18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 MAP3K4Q9Y6R4 1608 aa18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 CREB3L3Q68CJ9 461 aa18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 CDC5LQ99459 802 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 METTL22Q9BUU2 404 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 PLEKHG1Q9ULL1 1385 aa18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 GSDMDP57764 484 aa18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 SLC9C2Q5TAH2 1124 aa18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 TMX1Q9H3N1 280 aa18.87■□□□□ 0.61
CCDC88B-209ENST00000494080 GOLGA8AA7E2F4 631 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 SLC4A8Q2Y0W8 1093 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 DZIP3Q86Y13 1208 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 GPT2Q8TD30 523 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 LMAN1P49257 510 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 TTF1Q15361 905 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 Q6ZUG5 572 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 PPP1R1BQ9UD71 204 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 SLU7O95391 586 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 ZSCAN29Q8IWY8 852 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 DBNDD2Q9BQY9 259 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 PCDH11XQ9BZA7 1347 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 PCDH11YQ9BZA8 1340 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 GIGYF1O75420 1035 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 RDXP35241 583 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 PPFIBP1Q86W92 1011 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 WASF1Q92558 559 aa18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 NIP7Q9Y221 180 aaKnown RBP eCLIP18.86■□□□□ 0.61
CCDC88B-209ENST00000494080 NCOA7Q8NI08 942 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 MKNK2Q9HBH9 465 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 ATP7BP35670 1465 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 KLF18A0A0U1RQI7 1052 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 BIN1O00499 593 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 TMEM67Q5HYA8 995 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 ARAP3Q8WWN8 1544 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 CROCC2H7BZ55 1655 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 CTAGE5O15320 804 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 STX1AQ16623 288 aa18.85■□□□□ 0.61
CCDC88B-209ENST00000494080 FILIP1LQ4L180 1135 aa18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 USP6P35125 1406 aa18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 ZSCAN12O43309 604 aa18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 IQCA1Q86XH1 822 aa18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 FSIP1Q8NA03 581 aa18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 CDK5RAP3Q96JB5 506 aa18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 ZNF594Q96JF6 807 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 SYT1P21579 422 aa18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 RNF17Q9BXT8 1623 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 IRS4O14654 1257 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 SOGA3Q5TF21 947 aa18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 FAM227BQ96M60 508 aa18.84■□□□□ 0.61
CCDC88B-209ENST00000494080 FAM193AP78312 1265 aa18.83■□□□□ 0.61
CCDC88B-209ENST00000494080 SMARCE1Q969G3 411 aa18.83■□□□□ 0.61
CCDC88B-209ENST00000494080 CAVIN2O95810 425 aa18.83■□□□□ 0.61
CCDC88B-209ENST00000494080 GCKRQ14397 625 aa18.83■□□□□ 0.61
CCDC88B-209ENST00000494080 PLBD2Q8NHP8 589 aa18.83■□□□□ 0.61
CCDC88B-209ENST00000494080 CCDC196A0A1B0GTZ2 297 aa18.83■□□□□ 0.6
CCDC88B-209ENST00000494080 DMTNQ08495 405 aa18.83■□□□□ 0.6
CCDC88B-209ENST00000494080 CCDC152Q4G0S7 254 aa18.83■□□□□ 0.6
CCDC88B-209ENST00000494080 CCDC129Q6ZRS4 1044 aa18.83■□□□□ 0.6
CCDC88B-209ENST00000494080 IARSP41252 1262 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-209ENST00000494080 CCDC43Q96MW1 224 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-209ENST00000494080 ARHGAP31Q2M1Z3 1444 aa18.82■□□□□ 0.6
CCDC88B-209ENST00000494080 IGSF1Q8N6C5 1336 aa18.82■□□□□ 0.6
CCDC88B-209ENST00000494080 ZNF853P0CG23 659 aa18.82■□□□□ 0.6
CCDC88B-209ENST00000494080 C8orf37Q96NL8 207 aa18.82■□□□□ 0.6
CCDC88B-209ENST00000494080 ZFYP08048 801 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-209ENST00000494080 ZSWIM4Q9H7M6 989 aa18.82■□□□□ 0.6
CCDC88B-209ENST00000494080 DNAI1Q9UI46 699 aa18.82■□□□□ 0.6
CCDC88B-209ENST00000494080 NBPF5PQ86XG9 351 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-209ENST00000494080 CTCFLQ8NI51 663 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-209ENST00000494080 UQCRFS1P1P0C7P4 283 aa18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 TOP1P11387 765 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 METAP2P50579 478 aaKnown RBP eCLIP18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 NAP1L1P55209 391 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 GTF3C6Q969F1 213 aa18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 RNF41Q9H4P4 317 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 SGSM2O43147 1006 aa18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 JAKMIP3Q5VZ66 844 aa18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 MFSD6Q6ZSS7 791 aa18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 NLRP1Q9C000 1473 aa18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 CASQ1P31415 396 aa18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 ARHGAP29Q52LW3 1261 aa18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 SLAIN2Q9P270 581 aa18.81■□□□□ 0.6
CCDC88B-209ENST00000494080 CCAR1Q8IX12 1150 aaKnown RBP18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms