RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 MRPL50Q8N5N7 158 aaKnown RBP19.13■□□□□ 0.65
USP39-217ENST00000491659 SRCIN1Q9C0H9 1055 aa19.13■□□□□ 0.65
USP39-217ENST00000491659 DBNDD1Q9H9R9 158 aa19.13■□□□□ 0.65
USP39-217ENST00000491659 PTPRCP08575 1304 aa19.13■□□□□ 0.65
USP39-217ENST00000491659 PSME4Q14997 1843 aa19.12■□□□□ 0.65
USP39-217ENST00000491659 YDJCA8MPS7 323 aa19.12■□□□□ 0.65
USP39-217ENST00000491659 GRM8O00222 908 aa19.12■□□□□ 0.65
USP39-217ENST00000491659 ITGA6P23229 1130 aa19.12■□□□□ 0.65
USP39-217ENST00000491659 GPR101Q96P66 508 aaPredicted RBP19.12■□□□□ 0.65
USP39-217ENST00000491659 BCL2L13Q9BXK5 485 aa19.12■□□□□ 0.65
USP39-217ENST00000491659 ZC3H12CQ9C0D7 883 aaKnown RBP19.12■□□□□ 0.65
USP39-217ENST00000491659 BSDC1Q9NW68 430 aaPredicted RBP19.12■□□□□ 0.65
USP39-217ENST00000491659 C9orf78Q9NZ63 289 aaPredicted RBP19.12■□□□□ 0.65
USP39-217ENST00000491659 A0A1B0GUL6 1792 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 G3V3G9 751 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 ECE2O60344 883 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 ATP2B4P23634 1241 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 EPS15P42566 896 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 GMPSP49915 693 aaPredicted RBP19.11■□□□□ 0.65
USP39-217ENST00000491659 HTRA3P83110 453 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 ALDH1L2Q3SY69 923 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 DCAF8Q5TAQ9 597 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 SSH1Q8WYL5 1049 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 GPRC5DQ9NZD1 345 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 CEP350Q5VT06 3117 aa19.11■□□□□ 0.65
USP39-217ENST00000491659 CSF1RP07333 972 aa19.1■□□□□ 0.65
USP39-217ENST00000491659 CT47B1P0C2W7 299 aaPredicted RBP19.1■□□□□ 0.65
USP39-217ENST00000491659 DOK7Q18PE1 504 aa19.1■□□□□ 0.65
USP39-217ENST00000491659 USP50Q70EL3 339 aaPredicted RBP19.1■□□□□ 0.65
USP39-217ENST00000491659 TRMT2AQ8IZ69 625 aaKnown RBP19.1■□□□□ 0.65
USP39-217ENST00000491659 MIER1Q8N108 512 aa19.1■□□□□ 0.65
USP39-217ENST00000491659 MPHOSPH8Q99549 860 aa19.1■□□□□ 0.65
USP39-217ENST00000491659 ADARB2Q9NS39 739 aaKnown RBP19.1■□□□□ 0.65
USP39-217ENST00000491659 CHMP3Q9Y3E7 222 aa19.1■□□□□ 0.65
USP39-217ENST00000491659 SCN9AQ15858 1988 aa19.1■□□□□ 0.65
USP39-217ENST00000491659 ANKRD18BA2A2Z9 1011 aa19.09■□□□□ 0.65
USP39-217ENST00000491659 SMC4Q9NTJ3 1288 aa19.09■□□□□ 0.65
USP39-217ENST00000491659 MINPP1Q9UNW1 487 aa19.09■□□□□ 0.65
USP39-217ENST00000491659 MED23Q9ULK4 1368 aa19.07■□□□□ 0.64
USP39-217ENST00000491659 PASKQ96RG2 1323 aa19.07■□□□□ 0.64
USP39-217ENST00000491659 PSMD14O00487 310 aa19.07■□□□□ 0.64
USP39-217ENST00000491659 FOXO4P98177 505 aa19.07■□□□□ 0.64
USP39-217ENST00000491659 IFIT5Q13325 482 aaKnown RBP19.07■□□□□ 0.64
USP39-217ENST00000491659 MAP1SQ66K74 1059 aaPredicted RBP19.07■□□□□ 0.64
USP39-217ENST00000491659 DNAJC5GQ8N7S2 189 aa19.07■□□□□ 0.64
USP39-217ENST00000491659 KLRG1Q96E93 195 aa19.07■□□□□ 0.64
USP39-217ENST00000491659 ANKRD2Q9GZV1 360 aa19.07■□□□□ 0.64
USP39-217ENST00000491659 CCT4P50991 539 aaKnown RBP19.06■□□□□ 0.64
USP39-217ENST00000491659 CNTROBQ8N137 903 aa19.06■□□□□ 0.64
USP39-217ENST00000491659 H7C1D1 291 aa19.05■□□□□ 0.64
USP39-217ENST00000491659 RPS12P25398 132 aaKnown RBP19.05■□□□□ 0.64
USP39-217ENST00000491659 TAF7LQ5H9L4 462 aa19.05■□□□□ 0.64
USP39-217ENST00000491659 LMBR1LQ6UX01 489 aa19.05■□□□□ 0.64
USP39-217ENST00000491659 CREBZFQ9NS37 354 aa19.05■□□□□ 0.64
USP39-217ENST00000491659 LEMD3Q9Y2U8 911 aa19.05■□□□□ 0.64
USP39-217ENST00000491659 TRPM7Q96QT4 1865 aa19.05■□□□□ 0.64
USP39-217ENST00000491659 ITGBL1O95965 494 aaPredicted RBP19.04■□□□□ 0.64
USP39-217ENST00000491659 CCDC57Q2TAC2 916 aa19.04■□□□□ 0.64
USP39-217ENST00000491659 MICALL2Q8IY33 904 aa19.04■□□□□ 0.64
USP39-217ENST00000491659 DPF2Q92785 391 aa19.04■□□□□ 0.64
USP39-217ENST00000491659 CNOT7Q9UIV1 285 aaKnown RBP19.04■□□□□ 0.64
USP39-217ENST00000491659 ZBTB12Q9Y330 459 aaPredicted RBP19.04■□□□□ 0.64
USP39-217ENST00000491659 UTYO14607 1347 aa19.03■□□□□ 0.64
USP39-217ENST00000491659 KCNJ4P48050 445 aa19.03■□□□□ 0.64
USP39-217ENST00000491659 EPHA10Q5JZY3 1008 aa19.03■□□□□ 0.64
USP39-217ENST00000491659 SUCLG2Q96I99 432 aa19.03■□□□□ 0.64
USP39-217ENST00000491659 ZNF804BA4D1E1 1349 aa19.02■□□□□ 0.64
USP39-217ENST00000491659 ZNF646O15015 1829 aaPredicted RBP19.02■□□□□ 0.64
USP39-217ENST00000491659 ZNF609O15014 1411 aa19.02■□□□□ 0.64
USP39-217ENST00000491659 NBPF7P0C2Y1 421 aaPredicted RBP19.02■□□□□ 0.64
USP39-217ENST00000491659 CHRNDQ07001 517 aa19.02■□□□□ 0.64
USP39-217ENST00000491659 PODNQ7Z5L7 613 aa19.02■□□□□ 0.64
USP39-217ENST00000491659 KCNQ5Q9NR82 932 aa19.02■□□□□ 0.64
USP39-217ENST00000491659 TMEM88BA6NKF7 163 aa19.01■□□□□ 0.63
USP39-217ENST00000491659 HNRNPUQ00839 825 aaKnown RBP eCLIP19.01■□□□□ 0.63
USP39-217ENST00000491659 SHTN1A0MZ66 631 aa19■□□□□ 0.63
USP39-217ENST00000491659 VIL1P09327 827 aaKnown RBP19■□□□□ 0.63
USP39-217ENST00000491659 TRPM4Q8TD43 1214 aa19■□□□□ 0.63
USP39-217ENST00000491659 COA1Q9GZY4 146 aa19■□□□□ 0.63
USP39-217ENST00000491659 CNNM1Q9NRU3 951 aa19■□□□□ 0.63
USP39-217ENST00000491659 KIF16BQ96L93 1317 aa19■□□□□ 0.63
USP39-217ENST00000491659 WTIPA6NIX2 430 aaPredicted RBP18.99■□□□□ 0.63
USP39-217ENST00000491659 RSBN1LQ6PCB5 846 aaPredicted RBP18.99■□□□□ 0.63
USP39-217ENST00000491659 LDHAL6AQ6ZMR3 332 aa18.99■□□□□ 0.63
USP39-217ENST00000491659 AGBL3Q8NEM8 1001 aa18.99■□□□□ 0.63
USP39-217ENST00000491659 ZC3H15Q8WU90 426 aaKnown RBP18.99■□□□□ 0.63
USP39-217ENST00000491659 ZNF594Q96JF6 807 aaPredicted RBP18.99■□□□□ 0.63
USP39-217ENST00000491659 API5Q9BZZ5 524 aaKnown RBP18.99■□□□□ 0.63
USP39-217ENST00000491659 BICC1Q9H694 974 aaKnown RBP18.99■□□□□ 0.63
USP39-217ENST00000491659 USP17L3A6NCW0 530 aa18.98■□□□□ 0.63
USP39-217ENST00000491659 USP17L4A6NCW7 530 aa18.98■□□□□ 0.63
USP39-217ENST00000491659 RARSP54136 660 aaKnown RBP18.98■□□□□ 0.63
USP39-217ENST00000491659 BRPF1P55201 1214 aaPredicted RBP18.98■□□□□ 0.63
USP39-217ENST00000491659 USP17L1Q7RTZ2 530 aa18.98■□□□□ 0.63
USP39-217ENST00000491659 SAMD7Q7Z3H4 446 aa18.98■□□□□ 0.63
USP39-217ENST00000491659 JMYQ8N9B5 988 aa18.98■□□□□ 0.63
USP39-217ENST00000491659 KAZALD1Q96I82 304 aa18.98■□□□□ 0.63
USP39-217ENST00000491659 NOB1Q9ULX3 412 aaKnown RBP18.98■□□□□ 0.63
USP39-217ENST00000491659 TAF5LO75529 589 aa18.97■□□□□ 0.63
USP39-217ENST00000491659 HIRAP54198 1017 aaPredicted RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms