RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SGIP1Q9BQI5 828 aa17.35■□□□□ 0.37
CUX1-209ENST00000487284 PUS3Q9BZE2 481 aaKnown RBP17.35■□□□□ 0.37
CUX1-209ENST00000487284 LRRC24Q50LG9 513 aa17.34■□□□□ 0.37
CUX1-209ENST00000487284 DDX46Q7L014 1031 aaKnown RBP17.34■□□□□ 0.37
CUX1-209ENST00000487284 CELF1Q92879 486 aaKnown RBP17.34■□□□□ 0.37
CUX1-209ENST00000487284 C22orf23Q9BZE7 217 aa17.34■□□□□ 0.37
CUX1-209ENST00000487284 KIF13BQ9NQT8 1826 aa17.34■□□□□ 0.37
CUX1-209ENST00000487284 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.34■□□□□ 0.37
CUX1-209ENST00000487284 EYA2O00167 538 aa17.33■□□□□ 0.37
CUX1-209ENST00000487284 IFIT2P09913 472 aaKnown RBP17.33■□□□□ 0.37
CUX1-209ENST00000487284 PDE6BP35913 854 aa17.33■□□□□ 0.37
CUX1-209ENST00000487284 PTGER2P43116 358 aa17.33■□□□□ 0.37
CUX1-209ENST00000487284 CASC1Q6TDU7 716 aa17.33■□□□□ 0.37
CUX1-209ENST00000487284 ATG9AQ7Z3C6 839 aa17.33■□□□□ 0.37
CUX1-209ENST00000487284 AACSQ86V21 672 aa17.33■□□□□ 0.37
CUX1-209ENST00000487284 RPGRQ92834 1020 aaKnown RBP17.33■□□□□ 0.37
CUX1-209ENST00000487284 EAF2Q96CJ1 260 aaPredicted RBP17.33■□□□□ 0.37
CUX1-209ENST00000487284 CDC5LQ99459 802 aaKnown RBP17.33■□□□□ 0.37
CUX1-209ENST00000487284 RBM25P49756 843 aaKnown RBP17.32■□□□□ 0.36
CUX1-209ENST00000487284 LDHAL6AQ6ZMR3 332 aa17.32■□□□□ 0.36
CUX1-209ENST00000487284 GPATCH3Q96I76 525 aa17.32■□□□□ 0.36
CUX1-209ENST00000487284 ECHDC1Q9NTX5 307 aa17.32■□□□□ 0.36
CUX1-209ENST00000487284 CACNA1SQ13698 1873 aa17.32■□□□□ 0.36
CUX1-209ENST00000487284 GLRX3O76003 335 aaKnown RBP17.32■□□□□ 0.36
CUX1-209ENST00000487284 CIAO1O76071 339 aa17.32■□□□□ 0.36
CUX1-209ENST00000487284 IGHMBP2P38935 993 aaKnown RBP17.32■□□□□ 0.36
CUX1-209ENST00000487284 ANKRD18AQ8IVF6 992 aa17.32■□□□□ 0.36
CUX1-209ENST00000487284 MPHOSPH8Q99549 860 aa17.32■□□□□ 0.36
CUX1-209ENST00000487284 CNNM1Q9NRU3 951 aa17.32■□□□□ 0.36
CUX1-209ENST00000487284 FBXO3Q9UK99 471 aa17.32■□□□□ 0.36
CUX1-209ENST00000487284 A0A1B0GUL6 1792 aa17.31■□□□□ 0.36
CUX1-209ENST00000487284 ERC2O15083 957 aa17.31■□□□□ 0.36
CUX1-209ENST00000487284 SRGNP10124 158 aa17.31■□□□□ 0.36
CUX1-209ENST00000487284 HOXA10P31260 410 aaPredicted RBP17.31■□□□□ 0.36
CUX1-209ENST00000487284 IL15P40933 162 aaPredicted RBP17.31■□□□□ 0.36
CUX1-209ENST00000487284 RBM17Q96I25 401 aaKnown RBP17.31■□□□□ 0.36
CUX1-209ENST00000487284 TRIM6-TRIM34B2RNG4 842 aa17.3■□□□□ 0.36
CUX1-209ENST00000487284 RPS8P62241 208 aaKnown RBP17.3■□□□□ 0.36
CUX1-209ENST00000487284 TFCP2Q12800 502 aa17.3■□□□□ 0.36
CUX1-209ENST00000487284 GRAPQ13588 217 aa17.3■□□□□ 0.36
CUX1-209ENST00000487284 C2CD5Q86YS7 1000 aa17.3■□□□□ 0.36
CUX1-209ENST00000487284 GRAPLQ8TC17 118 aaPredicted RBP17.3■□□□□ 0.36
CUX1-209ENST00000487284 RIPOR2Q9Y4F9 1068 aa17.3■□□□□ 0.36
CUX1-209ENST00000487284 DLEC1Q9Y238 1755 aa17.3■□□□□ 0.36
CUX1-209ENST00000487284 KIAA1551Q9HCM1 1747 aa17.3■□□□□ 0.36
CUX1-209ENST00000487284 ARAP2Q8WZ64 1704 aa17.29■□□□□ 0.36
CUX1-209ENST00000487284 NPR1P16066 1061 aa17.29■□□□□ 0.36
CUX1-209ENST00000487284 CHRNA5P30532 468 aa17.29■□□□□ 0.36
CUX1-209ENST00000487284 TNNI3KQ59H18 835 aa17.29■□□□□ 0.36
CUX1-209ENST00000487284 SPON1Q9HCB6 807 aa17.29■□□□□ 0.36
CUX1-209ENST00000487284 GPR108Q9NPR9 543 aa17.29■□□□□ 0.36
CUX1-209ENST00000487284 FPGT-TNNI3KV9GXZ4 949 aa17.29■□□□□ 0.36
CUX1-209ENST00000487284 H0YIN7 160 aa17.28■□□□□ 0.36
CUX1-209ENST00000487284 MASTLQ96GX5 879 aa17.28■□□□□ 0.36
CUX1-209ENST00000487284 CRAMP1Q96RY5 1269 aa17.28■□□□□ 0.36
CUX1-209ENST00000487284 ZNF609O15014 1411 aa17.28■□□□□ 0.36
CUX1-209ENST00000487284 CHMLP26374 656 aa17.28■□□□□ 0.36
CUX1-209ENST00000487284 SLC51AQ86UW1 340 aa17.28■□□□□ 0.36
CUX1-209ENST00000487284 RILPL2Q969X0 211 aa17.28■□□□□ 0.36
CUX1-209ENST00000487284 CCDC8Q9H0W5 538 aaPredicted RBP17.28■□□□□ 0.36
CUX1-209ENST00000487284 BSDC1Q9NW68 430 aaPredicted RBP17.28■□□□□ 0.36
CUX1-209ENST00000487284 TLR7Q9NYK1 1049 aaKnown RBP17.28■□□□□ 0.36
CUX1-209ENST00000487284 METTL24Q5JXM2 366 aa17.27■□□□□ 0.35
CUX1-209ENST00000487284 CNTROBQ8N137 903 aa17.27■□□□□ 0.35
CUX1-209ENST00000487284 REC8O95072 547 aa17.26■□□□□ 0.35
CUX1-209ENST00000487284 VGLL2Q8N8G2 317 aa17.26■□□□□ 0.35
CUX1-209ENST00000487284 HELBQ8NG08 1087 aaPredicted RBP17.26■□□□□ 0.35
CUX1-209ENST00000487284 ZNF622Q969S3 477 aaKnown RBP eCLIP17.26■□□□□ 0.35
CUX1-209ENST00000487284 ESYT1Q9BSJ8 1104 aa17.26■□□□□ 0.35
CUX1-209ENST00000487284 CEP126Q9P2H0 1117 aa17.26■□□□□ 0.35
CUX1-209ENST00000487284 PPP1R1BQ9UD71 204 aaPredicted RBP17.26■□□□□ 0.35
CUX1-209ENST00000487284 DBNLQ9UJU6 430 aaKnown RBP17.26■□□□□ 0.35
CUX1-209ENST00000487284 LRRC37AA6NMS7 1700 aa17.26■□□□□ 0.35
CUX1-209ENST00000487284 MROH5Q6ZUA9 1318 aa17.25■□□□□ 0.35
CUX1-209ENST00000487284 CHRNDQ07001 517 aa17.25■□□□□ 0.35
CUX1-209ENST00000487284 STYK1Q6J9G0 422 aa17.25■□□□□ 0.35
CUX1-209ENST00000487284 KLHL34Q8N239 644 aa17.25■□□□□ 0.35
CUX1-209ENST00000487284 MINPP1Q9UNW1 487 aa17.25■□□□□ 0.35
CUX1-209ENST00000487284 SLX4Q8IY92 1834 aa17.25■□□□□ 0.35
CUX1-209ENST00000487284 TAF5LO75529 589 aa17.24■□□□□ 0.35
CUX1-209ENST00000487284 BBOX1O75936 387 aa17.24■□□□□ 0.35
CUX1-209ENST00000487284 DPEP1P16444 411 aa17.24■□□□□ 0.35
CUX1-209ENST00000487284 ALDH1B1P30837 517 aa17.24■□□□□ 0.35
CUX1-209ENST00000487284 USP26Q9BXU7 913 aa17.24■□□□□ 0.35
CUX1-209ENST00000487284 GOLGB1Q14789 3259 aaKnown RBP17.24■□□□□ 0.35
CUX1-209ENST00000487284 MYH7P12883 1935 aa17.24■□□□□ 0.35
CUX1-209ENST00000487284 A0A0G2JLW4 131 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 PPEF1O14829 653 aaPredicted RBP17.23■□□□□ 0.35
CUX1-209ENST00000487284 PDE8BO95263 885 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 MAP4K4O95819 1239 aaPredicted RBP17.23■□□□□ 0.35
CUX1-209ENST00000487284 ATP5JP18859 108 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 BRCA1P38398 1863 aaKnown RBP17.23■□□□□ 0.35
CUX1-209ENST00000487284 SRCAPQ6ZRS2 3230 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 SNAP23O00161 211 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 KCNA3P22001 575 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 TGFB2P61812 414 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 EVI5LQ96CN4 794 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 KIF2CQ99661 725 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 DBNDD2Q9BQY9 259 aa17.23■□□□□ 0.35
CUX1-209ENST00000487284 CD2APQ9Y5K6 639 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms