RNA–Protein interactions for RNA: ENST00000477508.1

TOP3A-205, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 600 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-205ENST00000477508 PODXL2Q9NZ53 605 aa16.41■□□□□ 0.22
TOP3A-205ENST00000477508 NSFL1CQ9UNZ2 370 aaKnown RBP16.41■□□□□ 0.22
TOP3A-205ENST00000477508 SNED1Q8TER0 1413 aa16.41■□□□□ 0.22
TOP3A-205ENST00000477508 LRRC37AA6NMS7 1700 aa16.41■□□□□ 0.22
TOP3A-205ENST00000477508 ZC3H4Q9UPT8 1303 aaKnown RBP16.41■□□□□ 0.22
TOP3A-205ENST00000477508 C9orf131Q5VYM1 1079 aa16.4■□□□□ 0.22
TOP3A-205ENST00000477508 ANKRD2Q9GZV1 360 aa16.4■□□□□ 0.22
TOP3A-205ENST00000477508 RNF181Q9P0P0 153 aa16.4■□□□□ 0.22
TOP3A-205ENST00000477508 ANKIB1Q9P2G1 1089 aa16.4■□□□□ 0.22
TOP3A-205ENST00000477508 SBF1O95248 1867 aa16.39■□□□□ 0.22
TOP3A-205ENST00000477508 RRP1P56182 461 aaKnown RBP16.39■□□□□ 0.21
TOP3A-205ENST00000477508 MTX1Q13505 466 aa16.39■□□□□ 0.21
TOP3A-205ENST00000477508 LDHAL6AQ6ZMR3 332 aa16.39■□□□□ 0.21
TOP3A-205ENST00000477508 MINPP1Q9UNW1 487 aa16.39■□□□□ 0.21
TOP3A-205ENST00000477508 XDHP47989 1333 aa16.39■□□□□ 0.21
TOP3A-205ENST00000477508 ATP2B4P23634 1241 aa16.38■□□□□ 0.21
TOP3A-205ENST00000477508 IARSP41252 1262 aaKnown RBP16.38■□□□□ 0.21
TOP3A-205ENST00000477508 GPSM2P81274 684 aa16.38■□□□□ 0.21
TOP3A-205ENST00000477508 EYA3Q99504 573 aa16.38■□□□□ 0.21
TOP3A-205ENST00000477508 CNNM1Q9NRU3 951 aa16.38■□□□□ 0.21
TOP3A-205ENST00000477508 GGA1Q9UJY5 639 aa16.38■□□□□ 0.21
TOP3A-205ENST00000477508 FBXO3Q9UK99 471 aa16.38■□□□□ 0.21
TOP3A-205ENST00000477508 COG6Q9Y2V7 657 aa16.38■□□□□ 0.21
TOP3A-205ENST00000477508 C6orf229H3BNL8 230 aa16.37■□□□□ 0.21
TOP3A-205ENST00000477508 JDP2Q8WYK2 163 aa16.37■□□□□ 0.21
TOP3A-205ENST00000477508 ZNF277Q9NRM2 450 aaPredicted RBP16.37■□□□□ 0.21
TOP3A-205ENST00000477508 LEMD3Q9Y2U8 911 aa16.37■□□□□ 0.21
TOP3A-205ENST00000477508 CCDC88AQ3V6T2 1871 aa16.37■□□□□ 0.21
TOP3A-205ENST00000477508 COL4A1P02462 1669 aa16.37■□□□□ 0.21
TOP3A-205ENST00000477508 TBC1D16Q8TBP0 767 aa16.36■□□□□ 0.21
TOP3A-205ENST00000477508 ZNF594Q96JF6 807 aaPredicted RBP16.36■□□□□ 0.21
TOP3A-205ENST00000477508 DICER1Q9UPY3 1922 aaKnown RBP16.36■□□□□ 0.21
TOP3A-205ENST00000477508 SRGAP3O43295 1099 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 PPIP5K2O43314 1243 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 UFL1O94874 794 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 PRELPP51888 382 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 CHRNDQ07001 517 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 KIAA2012Q0VF49 1180 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 WASHC4Q2M389 1173 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 LARGE2Q8N3Y3 721 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 ZC3H12CQ9C0D7 883 aaKnown RBP16.35■□□□□ 0.21
TOP3A-205ENST00000477508 POLLQ9UGP5 575 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 MROH5Q6ZUA9 1318 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 SPEF2Q9C093 1822 aa16.35■□□□□ 0.21
TOP3A-205ENST00000477508 RFX5P48382 616 aaPredicted RBP16.34■□□□□ 0.21
TOP3A-205ENST00000477508 PTPN12Q05209 780 aaKnown RBP16.34■□□□□ 0.21
TOP3A-205ENST00000477508 C20orf194Q5TEA3 1177 aa16.34■□□□□ 0.21
TOP3A-205ENST00000477508 COPRSQ9NQ92 184 aa16.34■□□□□ 0.21
TOP3A-205ENST00000477508 ZBTB40Q9NUA8 1239 aa16.34■□□□□ 0.21
TOP3A-205ENST00000477508 RIPOR2Q9Y4F9 1068 aa16.34■□□□□ 0.21
TOP3A-205ENST00000477508 EYA2O00167 538 aa16.33■□□□□ 0.2
TOP3A-205ENST00000477508 CIAO1O76071 339 aa16.33■□□□□ 0.2
TOP3A-205ENST00000477508 KCNJ4P48050 445 aa16.33■□□□□ 0.2
TOP3A-205ENST00000477508 ATP8B2P98198 1209 aa16.33■□□□□ 0.2
TOP3A-205ENST00000477508 DPY19L2Q6NUT2 758 aa16.33■□□□□ 0.2
TOP3A-205ENST00000477508 SLC51AQ86UW1 340 aa16.33■□□□□ 0.2
TOP3A-205ENST00000477508 NIM1KQ8IY84 436 aa16.33■□□□□ 0.2
TOP3A-205ENST00000477508 LTBP1Q14766 1721 aa16.33■□□□□ 0.2
TOP3A-205ENST00000477508 ZNF804BA4D1E1 1349 aa16.32■□□□□ 0.2
TOP3A-205ENST00000477508 AOC3Q16853 763 aa16.32■□□□□ 0.2
TOP3A-205ENST00000477508 DUOX1Q9NRD9 1551 aa16.32■□□□□ 0.2
TOP3A-205ENST00000477508 MED23Q9ULK4 1368 aa16.31■□□□□ 0.2
TOP3A-205ENST00000477508 KDM2BQ8NHM5 1336 aa16.31■□□□□ 0.2
TOP3A-205ENST00000477508 G3V3G9 751 aa16.31■□□□□ 0.2
TOP3A-205ENST00000477508 IL15P40933 162 aaPredicted RBP16.31■□□□□ 0.2
TOP3A-205ENST00000477508 EIF6P56537 245 aaKnown RBP16.31■□□□□ 0.2
TOP3A-205ENST00000477508 METTL24Q5JXM2 366 aa16.31■□□□□ 0.2
TOP3A-205ENST00000477508 DCAF8Q5TAQ9 597 aa16.31■□□□□ 0.2
TOP3A-205ENST00000477508 RPAP2Q8IXW5 612 aaPredicted RBP16.31■□□□□ 0.2
TOP3A-205ENST00000477508 KLHDC4Q8TBB5 520 aa16.31■□□□□ 0.2
TOP3A-205ENST00000477508 SSH3Q8TE77 659 aa16.31■□□□□ 0.2
TOP3A-205ENST00000477508 PUS3Q9BZE2 481 aaKnown RBP16.31■□□□□ 0.2
TOP3A-205ENST00000477508 ZNRF3Q9ULT6 936 aa16.31■□□□□ 0.2
TOP3A-205ENST00000477508 FZD9O00144 591 aa16.3■□□□□ 0.2
TOP3A-205ENST00000477508 UBE4AQ14139 1066 aa16.3■□□□□ 0.2
TOP3A-205ENST00000477508 LRRC24Q50LG9 513 aa16.3■□□□□ 0.2
TOP3A-205ENST00000477508 C15orf52Q6ZUT6 534 aaKnown RBP16.3■□□□□ 0.2
TOP3A-205ENST00000477508 C1orf115Q9H7X2 142 aa16.3■□□□□ 0.2
TOP3A-205ENST00000477508 TIAM2Q8IVF5 1701 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 PNMA6EA0A0J9YXQ4 647 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 GLTPD2A6NH11 291 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 RIMBP2O15034 1052 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 HMMRO75330 724 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 TAF5LO75529 589 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 PDE8BO95263 885 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 AAMPQ13685 434 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 POLA2Q14181 598 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 CEP85Q6P2H3 762 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 HELBQ8NG08 1087 aaPredicted RBP16.29■□□□□ 0.2
TOP3A-205ENST00000477508 CEP126Q9P2H0 1117 aa16.29■□□□□ 0.2
TOP3A-205ENST00000477508 SUPT16HQ9Y5B9 1047 aaKnown RBP16.29■□□□□ 0.2
TOP3A-205ENST00000477508 G3BP1Q13283 466 aaKnown RBP eCLIP16.28■□□□□ 0.2
TOP3A-205ENST00000477508 ATG9AQ7Z3C6 839 aa16.28■□□□□ 0.2
TOP3A-205ENST00000477508 SIL1Q9H173 461 aa16.28■□□□□ 0.2
TOP3A-205ENST00000477508 TNIP1Q15025 636 aa16.27■□□□□ 0.2
TOP3A-205ENST00000477508 PUM3Q15397 648 aaKnown RBP16.27■□□□□ 0.2
TOP3A-205ENST00000477508 PODNQ7Z5L7 613 aa16.27■□□□□ 0.2
TOP3A-205ENST00000477508 VGLL2Q8N8G2 317 aa16.27■□□□□ 0.2
TOP3A-205ENST00000477508 COA1Q9GZY4 146 aa16.27■□□□□ 0.2
TOP3A-205ENST00000477508 PA2G4Q9UQ80 394 aaKnown RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms