RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 CCDC57Q2TAC2 916 aa17.91■□□□□ 0.46
VAMP4-203ENST00000474047 TBC1D16Q8TBP0 767 aa17.91■□□□□ 0.46
VAMP4-203ENST00000474047 FRAT1Q92837 279 aaPredicted RBP17.91■□□□□ 0.46
VAMP4-203ENST00000474047 PODXL2Q9NZ53 605 aa17.91■□□□□ 0.46
VAMP4-203ENST00000474047 XDHP47989 1333 aa17.91■□□□□ 0.46
VAMP4-203ENST00000474047 LRRC37AA6NMS7 1700 aa17.91■□□□□ 0.46
VAMP4-203ENST00000474047 COL4A1P02462 1669 aa17.9■□□□□ 0.46
VAMP4-203ENST00000474047 NBPF7P0C2Y1 421 aaPredicted RBP17.9■□□□□ 0.46
VAMP4-203ENST00000474047 RBM46Q8TBY0 533 aaKnown RBP17.9■□□□□ 0.46
VAMP4-203ENST00000474047 ATP2B4P23634 1241 aa17.89■□□□□ 0.46
VAMP4-203ENST00000474047 MINPP1Q9UNW1 487 aa17.89■□□□□ 0.46
VAMP4-203ENST00000474047 WDR90Q96KV7 1748 aa17.89■□□□□ 0.45
VAMP4-203ENST00000474047 LMOD1P29536 600 aaPredicted RBP17.89■□□□□ 0.45
VAMP4-203ENST00000474047 TNIP1Q15025 636 aa17.89■□□□□ 0.45
VAMP4-203ENST00000474047 EPHA10Q5JZY3 1008 aa17.89■□□□□ 0.45
VAMP4-203ENST00000474047 SUCLG2Q96I99 432 aa17.89■□□□□ 0.45
VAMP4-203ENST00000474047 L3MBTL3Q96JM7 780 aaPredicted RBP17.89■□□□□ 0.45
VAMP4-203ENST00000474047 GPR101Q96P66 508 aaPredicted RBP17.89■□□□□ 0.45
VAMP4-203ENST00000474047 HACL1Q9UJ83 578 aa17.89■□□□□ 0.45
VAMP4-203ENST00000474047 SPEF2Q9C093 1822 aa17.88■□□□□ 0.45
VAMP4-203ENST00000474047 COL4A5P29400 1685 aa17.88■□□□□ 0.45
VAMP4-203ENST00000474047 POTECB2RU33 542 aa17.88■□□□□ 0.45
VAMP4-203ENST00000474047 BCAR3O75815 825 aa17.88■□□□□ 0.45
VAMP4-203ENST00000474047 SMC1BQ8NDV3 1235 aa17.88■□□□□ 0.45
VAMP4-203ENST00000474047 ARHGAP45Q92619 1136 aa17.88■□□□□ 0.45
VAMP4-203ENST00000474047 ANKRD2Q9GZV1 360 aa17.88■□□□□ 0.45
VAMP4-203ENST00000474047 UTYO14607 1347 aa17.87■□□□□ 0.45
VAMP4-203ENST00000474047 RAD17O75943 681 aa17.87■□□□□ 0.45
VAMP4-203ENST00000474047 CXCL9Q07325 125 aa17.87■□□□□ 0.45
VAMP4-203ENST00000474047 DOK7Q18PE1 504 aa17.87■□□□□ 0.45
VAMP4-203ENST00000474047 CIAPIN1Q6FI81 312 aa17.87■□□□□ 0.45
VAMP4-203ENST00000474047 USP44Q9H0E7 712 aa17.87■□□□□ 0.45
VAMP4-203ENST00000474047 DBNDD1Q9H9R9 158 aa17.87■□□□□ 0.45
VAMP4-203ENST00000474047 KCNJ4P48050 445 aa17.86■□□□□ 0.45
VAMP4-203ENST00000474047 DUOX1Q9NRD9 1551 aa17.86■□□□□ 0.45
VAMP4-203ENST00000474047 ECE2O60344 883 aa17.86■□□□□ 0.45
VAMP4-203ENST00000474047 FSTL1Q12841 308 aa17.86■□□□□ 0.45
VAMP4-203ENST00000474047 EAPPQ56P03 285 aaPredicted RBP17.86■□□□□ 0.45
VAMP4-203ENST00000474047 LDHAL6AQ6ZMR3 332 aa17.86■□□□□ 0.45
VAMP4-203ENST00000474047 BICC1Q9H694 974 aaKnown RBP17.86■□□□□ 0.45
VAMP4-203ENST00000474047 CNNM1Q9NRU3 951 aa17.86■□□□□ 0.45
VAMP4-203ENST00000474047 HDAC5Q9UQL6 1122 aa17.86■□□□□ 0.45
VAMP4-203ENST00000474047 UBTFL1P0CB47 393 aaPredicted RBP17.85■□□□□ 0.45
VAMP4-203ENST00000474047 ZNF594Q96JF6 807 aaPredicted RBP17.85■□□□□ 0.45
VAMP4-203ENST00000474047 TAF1DQ9H5J8 278 aaPredicted RBP17.85■□□□□ 0.45
VAMP4-203ENST00000474047 CLEC11AQ9Y240 323 aa17.85■□□□□ 0.45
VAMP4-203ENST00000474047 LEMD3Q9Y2U8 911 aa17.85■□□□□ 0.45
VAMP4-203ENST00000474047 EPHX2P34913 555 aa17.84■□□□□ 0.45
VAMP4-203ENST00000474047 CHRNDQ07001 517 aa17.84■□□□□ 0.45
VAMP4-203ENST00000474047 SCN4AP35499 1836 aa17.84■□□□□ 0.45
VAMP4-203ENST00000474047 ZKSCAN2Q63HK3 967 aa17.84■□□□□ 0.45
VAMP4-203ENST00000474047 ATF7IPQ6VMQ6 1270 aa17.84■□□□□ 0.45
VAMP4-203ENST00000474047 PNMA8AQ86V59 439 aaPredicted RBP17.84■□□□□ 0.45
VAMP4-203ENST00000474047 YDJCA8MPS7 323 aa17.83■□□□□ 0.44
VAMP4-203ENST00000474047 PLIN1O60240 522 aa17.83■□□□□ 0.44
VAMP4-203ENST00000474047 HSPA6P17066 643 aa17.83■□□□□ 0.44
VAMP4-203ENST00000474047 CLUAP1Q96AJ1 413 aa17.83■□□□□ 0.44
VAMP4-203ENST00000474047 KAZALD1Q96I82 304 aa17.83■□□□□ 0.44
VAMP4-203ENST00000474047 ZNF804BA4D1E1 1349 aa17.82■□□□□ 0.44
VAMP4-203ENST00000474047 GMPSP49915 693 aaPredicted RBP17.82■□□□□ 0.44
VAMP4-203ENST00000474047 HELBQ8NG08 1087 aaPredicted RBP17.82■□□□□ 0.44
VAMP4-203ENST00000474047 LTBP1Q14766 1721 aa17.82■□□□□ 0.44
VAMP4-203ENST00000474047 TRIM27P14373 513 aa17.81■□□□□ 0.44
VAMP4-203ENST00000474047 INTS3Q68E01 1043 aaKnown RBP17.81■□□□□ 0.44
VAMP4-203ENST00000474047 CHADLQ6NUI6 762 aa17.81■□□□□ 0.44
VAMP4-203ENST00000474047 WTIPA6NIX2 430 aaPredicted RBP17.81■□□□□ 0.44
VAMP4-203ENST00000474047 PSMD14O00487 310 aa17.81■□□□□ 0.44
VAMP4-203ENST00000474047 TAF5LO75529 589 aa17.81■□□□□ 0.44
VAMP4-203ENST00000474047 EPS15P42566 896 aa17.81■□□□□ 0.44
VAMP4-203ENST00000474047 SCNN1DP51172 638 aa17.81■□□□□ 0.44
VAMP4-203ENST00000474047 RABL6Q3YEC7 729 aaPredicted RBP17.81■□□□□ 0.44
VAMP4-203ENST00000474047 LDHDQ86WU2 507 aa17.81■□□□□ 0.44
VAMP4-203ENST00000474047 ANKRD44Q8N8A2 993 aa17.81■□□□□ 0.44
VAMP4-203ENST00000474047 GPRC5DQ9NZD1 345 aa17.81■□□□□ 0.44
VAMP4-203ENST00000474047 MED23Q9ULK4 1368 aa17.8■□□□□ 0.44
VAMP4-203ENST00000474047 FTSJ3Q8IY81 847 aaKnown RBP17.8■□□□□ 0.44
VAMP4-203ENST00000474047 H7C1D1 291 aa17.79■□□□□ 0.44
VAMP4-203ENST00000474047 GNAI3P08754 354 aa17.79■□□□□ 0.44
VAMP4-203ENST00000474047 POTEIP0CG38 1075 aa17.79■□□□□ 0.44
VAMP4-203ENST00000474047 POTEJP0CG39 1038 aa17.79■□□□□ 0.44
VAMP4-203ENST00000474047 PODNQ7Z5L7 613 aa17.79■□□□□ 0.44
VAMP4-203ENST00000474047 FBXW7Q969H0 707 aa17.79■□□□□ 0.44
VAMP4-203ENST00000474047 KCNQ5Q9NR82 932 aa17.79■□□□□ 0.44
VAMP4-203ENST00000474047 CNOT7Q9UIV1 285 aaKnown RBP17.78■□□□□ 0.44
VAMP4-203ENST00000474047 ZBTB12Q9Y330 459 aaPredicted RBP17.78■□□□□ 0.44
VAMP4-203ENST00000474047 LRRFIP2Q9Y608 721 aaKnown RBP17.78■□□□□ 0.44
VAMP4-203ENST00000474047 APLP1P51693 650 aa17.78■□□□□ 0.44
VAMP4-203ENST00000474047 USP50Q70EL3 339 aaPredicted RBP17.78■□□□□ 0.44
VAMP4-203ENST00000474047 MEIS3Q99687 375 aa17.78■□□□□ 0.44
VAMP4-203ENST00000474047 COA1Q9GZY4 146 aa17.78■□□□□ 0.44
VAMP4-203ENST00000474047 ADARB2Q9NS39 739 aaKnown RBP17.78■□□□□ 0.44
VAMP4-203ENST00000474047 TNNQ9UQP3 1299 aa17.78■□□□□ 0.44
VAMP4-203ENST00000474047 RPS12P25398 132 aaKnown RBP17.77■□□□□ 0.44
VAMP4-203ENST00000474047 PUS3Q9BZE2 481 aaKnown RBP17.77■□□□□ 0.44
VAMP4-203ENST00000474047 MROH5Q6ZUA9 1318 aa17.77■□□□□ 0.43
VAMP4-203ENST00000474047 USP17L3A6NCW0 530 aa17.76■□□□□ 0.43
VAMP4-203ENST00000474047 USP17L4A6NCW7 530 aa17.76■□□□□ 0.43
VAMP4-203ENST00000474047 METTL24Q5JXM2 366 aa17.76■□□□□ 0.43
VAMP4-203ENST00000474047 USP17L1Q7RTZ2 530 aa17.76■□□□□ 0.43
VAMP4-203ENST00000474047 MICALL2Q8IY33 904 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms