RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CDC5LQ99459 802 aaKnown RBP15.35■□□□□ 0.05
USP40-210ENST00000454354 GREM2Q9H772 168 aa15.35■□□□□ 0.05
USP40-210ENST00000454354 CLEC11AQ9Y240 323 aa15.35■□□□□ 0.05
USP40-210ENST00000454354 POLR2AP24928 1970 aaKnown RBP15.35■□□□□ 0.05
USP40-210ENST00000454354 E9PSI1 815 aa15.34■□□□□ 0.05
USP40-210ENST00000454354 RAD17O75943 681 aa15.34■□□□□ 0.05
USP40-210ENST00000454354 GMPSP49915 693 aaPredicted RBP15.34■□□□□ 0.05
USP40-210ENST00000454354 ADARB2Q9NS39 739 aaKnown RBP15.34■□□□□ 0.05
USP40-210ENST00000454354 GGA1Q9UJY5 639 aa15.34■□□□□ 0.05
USP40-210ENST00000454354 XDHP47989 1333 aa15.34■□□□□ 0.05
USP40-210ENST00000454354 ZNF609O15014 1411 aa15.34■□□□□ 0.05
USP40-210ENST00000454354 F6X3S4 739 aa15.33■□□□□ 0.04
USP40-210ENST00000454354 ECE2O60344 883 aa15.33■□□□□ 0.04
USP40-210ENST00000454354 UFL1O94874 794 aa15.33■□□□□ 0.04
USP40-210ENST00000454354 CSF1RP07333 972 aa15.33■□□□□ 0.04
USP40-210ENST00000454354 MAP1SQ66K74 1059 aaPredicted RBP15.33■□□□□ 0.04
USP40-210ENST00000454354 DBNDD1Q9H9R9 158 aa15.33■□□□□ 0.04
USP40-210ENST00000454354 BSDC1Q9NW68 430 aaPredicted RBP15.33■□□□□ 0.04
USP40-210ENST00000454354 ANKIB1Q9P2G1 1089 aa15.33■□□□□ 0.04
USP40-210ENST00000454354 RIMBP2O15034 1052 aa15.32■□□□□ 0.04
USP40-210ENST00000454354 SLFN5Q08AF3 891 aa15.32■□□□□ 0.04
USP40-210ENST00000454354 CNTROBQ8N137 903 aa15.32■□□□□ 0.04
USP40-210ENST00000454354 GPR101Q96P66 508 aaPredicted RBP15.32■□□□□ 0.04
USP40-210ENST00000454354 ZC3H12CQ9C0D7 883 aaKnown RBP15.32■□□□□ 0.04
USP40-210ENST00000454354 PSMD14O00487 310 aa15.31■□□□□ 0.04
USP40-210ENST00000454354 ATP2B4P23634 1241 aa15.31■□□□□ 0.04
USP40-210ENST00000454354 FAM161AQ3B820 660 aa15.31■□□□□ 0.04
USP40-210ENST00000454354 DPF2Q92785 391 aa15.31■□□□□ 0.04
USP40-210ENST00000454354 BCL2L13Q9BXK5 485 aa15.31■□□□□ 0.04
USP40-210ENST00000454354 MINPP1Q9UNW1 487 aa15.31■□□□□ 0.04
USP40-210ENST00000454354 MED23Q9ULK4 1368 aa15.31■□□□□ 0.04
USP40-210ENST00000454354 TMEM88BA6NKF7 163 aa15.3■□□□□ 0.04
USP40-210ENST00000454354 ALDH1L1O75891 902 aa15.3■□□□□ 0.04
USP40-210ENST00000454354 ITGA6P23229 1130 aa15.3■□□□□ 0.04
USP40-210ENST00000454354 RPS12P25398 132 aaKnown RBP15.3■□□□□ 0.04
USP40-210ENST00000454354 CNTNAP1P78357 1384 aa15.3■□□□□ 0.04
USP40-210ENST00000454354 DOK7Q18PE1 504 aa15.3■□□□□ 0.04
USP40-210ENST00000454354 TRMT2AQ8IZ69 625 aaKnown RBP15.3■□□□□ 0.04
USP40-210ENST00000454354 THSD7BQ9C0I4 1608 aa15.3■□□□□ 0.04
USP40-210ENST00000454354 PGAP2Q9UHJ9 254 aa15.3■□□□□ 0.04
USP40-210ENST00000454354 IGHMBP2P38935 993 aaKnown RBP15.29■□□□□ 0.04
USP40-210ENST00000454354 FOXO4P98177 505 aa15.29■□□□□ 0.04
USP40-210ENST00000454354 MRPL50Q8N5N7 158 aaKnown RBP15.29■□□□□ 0.04
USP40-210ENST00000454354 CNOT7Q9UIV1 285 aaKnown RBP15.29■□□□□ 0.04
USP40-210ENST00000454354 PTPRCP08575 1304 aa15.28■□□□□ 0.04
USP40-210ENST00000454354 GRM8O00222 908 aa15.28■□□□□ 0.04
USP40-210ENST00000454354 VIL1P09327 827 aaKnown RBP15.28■□□□□ 0.04
USP40-210ENST00000454354 CCT4P50991 539 aaKnown RBP15.28■□□□□ 0.04
USP40-210ENST00000454354 MICALL2Q8IY33 904 aa15.28■□□□□ 0.04
USP40-210ENST00000454354 TRPM4Q8TD43 1214 aa15.28■□□□□ 0.04
USP40-210ENST00000454354 ZC3H15Q8WU90 426 aaKnown RBP15.28■□□□□ 0.04
USP40-210ENST00000454354 SRCIN1Q9C0H9 1055 aa15.28■□□□□ 0.04
USP40-210ENST00000454354 KCNQ5Q9NR82 932 aa15.28■□□□□ 0.04
USP40-210ENST00000454354 ZBTB12Q9Y330 459 aaPredicted RBP15.28■□□□□ 0.04
USP40-210ENST00000454354 SHTN1A0MZ66 631 aa15.27■□□□□ 0.04
USP40-210ENST00000454354 H7C1D1 291 aa15.27■□□□□ 0.04
USP40-210ENST00000454354 HIRAP54198 1017 aaPredicted RBP15.27■□□□□ 0.04
USP40-210ENST00000454354 SSH1Q8WYL5 1049 aa15.27■□□□□ 0.04
USP40-210ENST00000454354 CDCA7LQ96GN5 454 aa15.27■□□□□ 0.04
USP40-210ENST00000454354 UTYO14607 1347 aa15.26■□□□□ 0.03
USP40-210ENST00000454354 ANKRD18BA2A2Z9 1011 aa15.26■□□□□ 0.03
USP40-210ENST00000454354 ALDH1L2Q3SY69 923 aa15.26■□□□□ 0.03
USP40-210ENST00000454354 PODNQ7Z5L7 613 aa15.26■□□□□ 0.03
USP40-210ENST00000454354 MPHOSPH8Q99549 860 aa15.26■□□□□ 0.03
USP40-210ENST00000454354 ANKRD2Q9GZV1 360 aa15.26■□□□□ 0.03
USP40-210ENST00000454354 LEMD3Q9Y2U8 911 aa15.26■□□□□ 0.03
USP40-210ENST00000454354 ECM29Q5VYK3 1845 aa15.25■□□□□ 0.03
USP40-210ENST00000454354 WTIPA6NIX2 430 aaPredicted RBP15.25■□□□□ 0.03
USP40-210ENST00000454354 RASSF10A6NK89 507 aa15.25■□□□□ 0.03
USP40-210ENST00000454354 G3V3G9 751 aa15.25■□□□□ 0.03
USP40-210ENST00000454354 EPHA10Q5JZY3 1008 aa15.25■□□□□ 0.03
USP40-210ENST00000454354 DCAF8Q5TAQ9 597 aa15.25■□□□□ 0.03
USP40-210ENST00000454354 SLC4A10Q6U841 1118 aa15.25■□□□□ 0.03
USP40-210ENST00000454354 C9orf78Q9NZ63 289 aaPredicted RBP15.25■□□□□ 0.03
USP40-210ENST00000454354 MKRN1Q9UHC7 482 aaKnown RBP15.25■□□□□ 0.03
USP40-210ENST00000454354 ARAP2Q8WZ64 1704 aa15.24■□□□□ 0.03
USP40-210ENST00000454354 CT47B1P0C2W7 299 aaPredicted RBP15.24■□□□□ 0.03
USP40-210ENST00000454354 CHRNDQ07001 517 aa15.24■□□□□ 0.03
USP40-210ENST00000454354 IFIT5Q13325 482 aaKnown RBP15.24■□□□□ 0.03
USP40-210ENST00000454354 RSBN1LQ6PCB5 846 aaPredicted RBP15.24■□□□□ 0.03
USP40-210ENST00000454354 LMBR1LQ6UX01 489 aa15.24■□□□□ 0.03
USP40-210ENST00000454354 AGBL3Q8NEM8 1001 aa15.24■□□□□ 0.03
USP40-210ENST00000454354 ZNF804BA4D1E1 1349 aa15.23■□□□□ 0.03
USP40-210ENST00000454354 IRS2Q9Y4H2 1338 aa15.23■□□□□ 0.03
USP40-210ENST00000454354 TRAF5O00463 557 aa15.23■□□□□ 0.03
USP40-210ENST00000454354 EGFRP00533 1210 aa15.23■□□□□ 0.03
USP40-210ENST00000454354 FMR1Q06787 632 aaKnown RBP eCLIP15.23■□□□□ 0.03
USP40-210ENST00000454354 SAMD7Q7Z3H4 446 aa15.23■□□□□ 0.03
USP40-210ENST00000454354 KAZALD1Q96I82 304 aa15.23■□□□□ 0.03
USP40-210ENST00000454354 GMLQ99445 158 aa15.23■□□□□ 0.03
USP40-210ENST00000454354 COA1Q9GZY4 146 aa15.23■□□□□ 0.03
USP40-210ENST00000454354 USP17L3A6NCW0 530 aa15.22■□□□□ 0.03
USP40-210ENST00000454354 USP17L4A6NCW7 530 aa15.22■□□□□ 0.03
USP40-210ENST00000454354 NBPF7P0C2Y1 421 aaPredicted RBP15.22■□□□□ 0.03
USP40-210ENST00000454354 ZNF280AP59817 542 aaPredicted RBP15.22■□□□□ 0.03
USP40-210ENST00000454354 TBC1D10BQ4KMP7 808 aaPredicted RBP15.22■□□□□ 0.03
USP40-210ENST00000454354 CST9Q5W186 159 aa15.22■□□□□ 0.03
USP40-210ENST00000454354 USP17L1Q7RTZ2 530 aa15.22■□□□□ 0.03
USP40-210ENST00000454354 TXNRD3Q86VQ6 643 aa15.22■□□□□ 0.03
USP40-210ENST00000454354 SUCLG2Q96I99 432 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms