RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CCDC174Q6PII3 467 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 CCDC155Q8N6L0 562 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 WHAMMQ8TF30 809 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 GBP5Q96PP8 586 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 LRRD1A4D1F6 860 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 RPGRQ92834 1020 aaKnown RBP15.14■□□□□ 0.01
USP40-208ENST00000450966 PPP1R12CQ9BZL4 782 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 GOPCQ9HD26 462 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 RBM5P52756 815 aaKnown RBP eCLIP15.14■□□□□ 0.01
USP40-208ENST00000450966 CCDC184Q52MB2 194 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 RABGAP1Q9Y3P9 1069 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 SHANK2Q9UPX8 1470 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 FAM114A2Q9NRY5 505 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 NUP153P49790 1475 aaKnown RBP15.13■□□□□ 0.01
USP40-208ENST00000450966 GOLGA6CA6NDK9 693 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 GOLGA6DP0CG33 693 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 MAGEA9P43362 315 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 RRS1Q15050 365 aaKnown RBP15.13■□□□□ 0.01
USP40-208ENST00000450966 GOLGA6AQ9NYA3 693 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 CEP104O60308 925 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 SNCBQ16143 134 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 ANO6Q4KMQ2 910 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 CAVIN4Q5BKX8 364 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 BLOC1S2Q6QNY1 142 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 ATF7IPQ6VMQ6 1270 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 TRIM6Q9C030 488 aaPredicted RBP15.13■□□□□ 0.01
USP40-208ENST00000450966 CTNNA3Q9UI47 895 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 IRAK4Q9NWZ3 460 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 CABS1Q96KC9 395 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 TBX22Q9Y458 520 aa15.13■□□□□ 0.01
USP40-208ENST00000450966 ANKRD36BQ8N2N9 1353 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 TRPM2O94759 1503 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 IFIT1P09914 478 aaKnown RBP15.12■□□□□ 0.01
USP40-208ENST00000450966 SOGA3Q5TF21 947 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 STX6O43752 255 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 SMIM24O75264 130 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 FSD2A1L4K1 749 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 PIK3R5Q8WYR1 880 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 VCX3BQ9H321 246 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 VCX3AQ9NNX9 186 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 E2F4Q16254 413 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 CCDC178Q5BJE1 867 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 GDPD2Q9HCC8 539 aa15.12■□□□□ 0.01
USP40-208ENST00000450966 ACTN2P35609 894 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 CCDC92Q53HC0 331 aaPredicted RBP15.11■□□□□ 0.01
USP40-208ENST00000450966 MYL6BP14649 208 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 TERF2Q15554 542 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 CACNA2D4Q7Z3S7 1137 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 N4BP2L2Q92802 583 aaPredicted RBP15.11■□□□□ 0.01
USP40-208ENST00000450966 NUP88Q99567 741 aaPredicted RBP15.11■□□□□ 0.01
USP40-208ENST00000450966 JADE2Q9NQC1 790 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 ELP1O95163 1332 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 ZMYM3Q14202 1370 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 SETDB1Q15047 1291 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 ST5P78524 1137 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 KRT32Q14532 448 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 SYCP2Q9BX26 1530 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 MYO1CO00159 1063 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 POLD1P28340 1107 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 LIG3P49916 1009 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 BMP2KLQ5H9B9 411 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 PPP1R42Q7Z4L9 355 aa15.11■□□□□ 0.01
USP40-208ENST00000450966 HNRNPH2P55795 449 aaKnown RBP15.1■□□□□ 0.01
USP40-208ENST00000450966 SUFUQ9UMX1 484 aa15.1■□□□□ 0.01
USP40-208ENST00000450966 SLFN5Q08AF3 891 aa15.1■□□□□ 0.01
USP40-208ENST00000450966 BRD3Q15059 726 aa15.1■□□□□ 0.01
USP40-208ENST00000450966 STMN2Q93045 179 aa15.1■□□□□ 0.01
USP40-208ENST00000450966 SAAL1Q96ER3 474 aa15.1■□□□□ 0.01
USP40-208ENST00000450966 ADGRF5Q8IZF2 1346 aa15.1■□□□□ 0.01
USP40-208ENST00000450966 RFC1P35251 1148 aaPredicted RBP15.09■□□□□ 0.01
USP40-208ENST00000450966 JAKMIP1Q96N16 626 aaKnown RBP15.09■□□□□ 0.01
USP40-208ENST00000450966 BAIAP2L1Q9UHR4 511 aa15.09■□□□□ 0.01
USP40-208ENST00000450966 NOB1Q9ULX3 412 aaKnown RBP15.09■□□□□ 0.01
USP40-208ENST00000450966 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.09■□□□□ 0.01
USP40-208ENST00000450966 SYT1P21579 422 aa15.09■□□□□ 0.01
USP40-208ENST00000450966 STK3Q13188 491 aa15.09■□□□□ 0.01
USP40-208ENST00000450966 CETN3O15182 167 aa15.09■□□□□ 0.01
USP40-208ENST00000450966 NBPF6Q5VWK0 638 aa15.09■□□□□ 0.01
USP40-208ENST00000450966 USP48Q86UV5 1035 aa15.09■□□□□ 0.01
USP40-208ENST00000450966 FERMT3Q86UX7 667 aa15.09■□□□□ 0.01
USP40-208ENST00000450966 NBPF5PQ86XG9 351 aaPredicted RBP15.09■□□□□ 0.01
USP40-208ENST00000450966 GPR161Q8N6U8 529 aaKnown RBP15.09■□□□□ 0.01
USP40-208ENST00000450966 NBPF4Q96M43 638 aa15.09■□□□□ 0.01
USP40-208ENST00000450966 LIMCH1Q9UPQ0 1083 aa15.09■□□□□ 0.01
USP40-208ENST00000450966 GIGYF1O75420 1035 aaPredicted RBP15.08■□□□□ 0.01
USP40-208ENST00000450966 TSC1Q92574 1164 aa15.08■□□□□ 0.01
USP40-208ENST00000450966 VAV2P52735 878 aa15.08■□□□□ 0.01
USP40-208ENST00000450966 PPFIA1Q13136 1202 aa15.08■□□□□ 0.01
USP40-208ENST00000450966 RIPOR2Q9Y4F9 1068 aa15.08■□□□□ 0.01
USP40-208ENST00000450966 CFAP58Q5T655 872 aa15.08■□□□□ 0
USP40-208ENST00000450966 RPAP2Q8IXW5 612 aaPredicted RBP15.08■□□□□ 0
USP40-208ENST00000450966 CDC5LQ99459 802 aaKnown RBP15.08■□□□□ 0
USP40-208ENST00000450966 ARMC2Q8NEN0 867 aa15.08■□□□□ 0
USP40-208ENST00000450966 UBASH3AP57075 661 aa15.08■□□□□ 0
USP40-208ENST00000450966 ACEP12821 1306 aa15.07■□□□□ 0
USP40-208ENST00000450966 RHOXF2BP0C7M4 288 aa15.07■□□□□ 0
USP40-208ENST00000450966 C20orf194Q5TEA3 1177 aa15.07■□□□□ 0
USP40-208ENST00000450966 PNMA8AQ86V59 439 aaPredicted RBP15.07■□□□□ 0
USP40-208ENST00000450966 RNF10Q8N5U6 811 aaKnown RBP15.07■□□□□ 0
USP40-208ENST00000450966 DDX12PQ92771 950 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms