RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ME3Q16798 604 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 EVI5LQ96CN4 794 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 TAOK2Q9UL54 1235 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 TTC41PQ6P2S7 1318 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 FIBPO43427 364 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 RXRBP28702 533 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 RFX5P48382 616 aaPredicted RBP11.35□□□□□ -0.59
CUX1-206ENST00000437600 LRRC24Q50LG9 513 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 GPATCH3Q96I76 525 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 PUS3Q9BZE2 481 aaKnown RBP11.35□□□□□ -0.59
CUX1-206ENST00000437600 LIMCH1Q9UPQ0 1083 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 A0A0G2JLW4 131 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 VPS37CA5D8V6 355 aaPredicted RBP11.35□□□□□ -0.59
CUX1-206ENST00000437600 MCM2P49736 904 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 FOXO4P98177 505 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 CREB3L3Q68CJ9 461 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 ERC1Q8IUD2 1116 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 TPCN1Q9ULQ1 816 aa11.35□□□□□ -0.59
CUX1-206ENST00000437600 GJB2P29033 226 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 NECTIN1Q15223 517 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 KIF6Q6ZMV9 814 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 AMIGO3Q86WK7 504 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 SMC3Q9UQE7 1217 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 AOX1Q06278 1338 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 TJP1Q07157 1748 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 H7C1W4 665 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 CRKLP46109 303 aaKnown RBP11.34□□□□□ -0.59
CUX1-206ENST00000437600 FOSBP53539 338 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 RUFY2Q8WXA3 655 aa11.34□□□□□ -0.59
CUX1-206ENST00000437600 AFDNP55196 1824 aaKnown RBP11.34□□□□□ -0.59
CUX1-206ENST00000437600 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.33□□□□□ -0.6
CUX1-206ENST00000437600 HSP90AA2PQ14568 343 aaPredicted RBP11.33□□□□□ -0.6
CUX1-206ENST00000437600 LINC00116Q8NCU8 138 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 SNRKQ9NRH2 765 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 CYP46A1Q9Y6A2 500 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 ARFGEF2Q9Y6D5 1785 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 CCDC171Q6TFL3 1326 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 ESPNB1AK53 854 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 DNM1Q05193 864 aaKnown RBP11.33□□□□□ -0.6
CUX1-206ENST00000437600 ST3GAL1Q11201 340 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 TCIRG1Q13488 830 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 SLC27A2O14975 620 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 STX6O43752 255 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 ZKSCAN1P17029 563 aaPredicted RBP11.33□□□□□ -0.6
CUX1-206ENST00000437600 RABL6Q3YEC7 729 aaPredicted RBP11.33□□□□□ -0.6
CUX1-206ENST00000437600 TNNI3KQ59H18 835 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 CHST3Q7LGC8 479 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 CCDC191Q8NCU4 936 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 INTS4Q96HW7 963 aaKnown RBP11.33□□□□□ -0.6
CUX1-206ENST00000437600 COPRSQ9NQ92 184 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 FPGT-TNNI3KV9GXZ4 949 aa11.33□□□□□ -0.6
CUX1-206ENST00000437600 DDX11Q96FC9 970 aa11.32□□□□□ -0.6
CUX1-206ENST00000437600 GOLIM4O00461 696 aa11.32□□□□□ -0.6
CUX1-206ENST00000437600 HSP90AB3PQ58FF7 597 aa11.32□□□□□ -0.6
CUX1-206ENST00000437600 VPS53Q5VIR6 699 aa11.32□□□□□ -0.6
CUX1-206ENST00000437600 ILDR1Q86SU0 546 aaPredicted RBP11.32□□□□□ -0.6
CUX1-206ENST00000437600 MAP4K1Q92918 833 aa11.32□□□□□ -0.6
CUX1-206ENST00000437600 LRRC4BQ9NT99 713 aa11.32□□□□□ -0.6
CUX1-206ENST00000437600 TFIP11Q9UBB9 837 aaKnown RBP11.32□□□□□ -0.6
CUX1-206ENST00000437600 CCNL1Q9UK58 526 aaPredicted RBP11.32□□□□□ -0.6
CUX1-206ENST00000437600 PHF14O94880 888 aa11.31□□□□□ -0.6
CUX1-206ENST00000437600 PLCB2Q00722 1185 aa11.31□□□□□ -0.6
CUX1-206ENST00000437600 INTS5Q6P9B9 1019 aaKnown RBP11.31□□□□□ -0.6
CUX1-206ENST00000437600 DZIP3Q86Y13 1208 aaKnown RBP11.31□□□□□ -0.6
CUX1-206ENST00000437600 NAP1L2Q9ULW6 460 aaPredicted RBP11.31□□□□□ -0.6
CUX1-206ENST00000437600 TCHHQ07283 1943 aa11.31□□□□□ -0.6
CUX1-206ENST00000437600 ATG9AQ7Z3C6 839 aa11.3□□□□□ -0.6
CUX1-206ENST00000437600 ISCA1Q9BUE6 129 aa11.3□□□□□ -0.6
CUX1-206ENST00000437600 ZSWIM6Q9HCJ5 1215 aa11.3□□□□□ -0.6
CUX1-206ENST00000437600 MAP3K15Q6ZN16 1313 aa11.3□□□□□ -0.6
CUX1-206ENST00000437600 NHSQ6T4R5 1651 aa11.3□□□□□ -0.6
CUX1-206ENST00000437600 RPAP1Q9BWH6 1393 aaPredicted RBP11.3□□□□□ -0.6
CUX1-206ENST00000437600 ZSCAN22P10073 491 aaPredicted RBP11.3□□□□□ -0.6
CUX1-206ENST00000437600 PTMSP20962 102 aa11.3□□□□□ -0.6
CUX1-206ENST00000437600 ZNF445P59923 1031 aa11.3□□□□□ -0.6
CUX1-206ENST00000437600 FKBP4Q02790 459 aaKnown RBP eCLIP11.3□□□□□ -0.6
CUX1-206ENST00000437600 ANP32BQ92688 251 aaKnown RBP11.3□□□□□ -0.6
CUX1-206ENST00000437600 TEX13AQ9BXU3 409 aaPredicted RBP11.3□□□□□ -0.6
CUX1-206ENST00000437600 TRMT112Q9UI30 125 aaKnown RBP11.3□□□□□ -0.6
CUX1-206ENST00000437600 USP42Q9H9J4 1324 aaKnown RBP11.3□□□□□ -0.6
CUX1-206ENST00000437600 COL15A1P39059 1388 aa11.3□□□□□ -0.6
CUX1-206ENST00000437600 CCDC57Q2TAC2 916 aa11.3□□□□□ -0.6
CUX1-206ENST00000437600 LARP1BQ659C4 914 aaKnown RBP11.3□□□□□ -0.6
CUX1-206ENST00000437600 GIGYF2Q6Y7W6 1299 aaKnown RBP11.3□□□□□ -0.6
CUX1-206ENST00000437600 WDR33Q9C0J8 1336 aaKnown RBP11.3□□□□□ -0.6
CUX1-206ENST00000437600 TAF5LO75529 589 aa11.29□□□□□ -0.6
CUX1-206ENST00000437600 PI16Q6UXB8 463 aa11.29□□□□□ -0.6
CUX1-206ENST00000437600 CCDC87Q9NVE4 849 aa11.29□□□□□ -0.6
CUX1-206ENST00000437600 JAK2O60674 1132 aa11.29□□□□□ -0.6
CUX1-206ENST00000437600 HCLS1P14317 486 aaPredicted RBP11.29□□□□□ -0.6
CUX1-206ENST00000437600 CEBPZQ03701 1054 aaKnown RBP11.29□□□□□ -0.6
CUX1-206ENST00000437600 BLOC1S2Q6QNY1 142 aa11.29□□□□□ -0.6
CUX1-206ENST00000437600 FAM196AQ6ZSG2 479 aa11.29□□□□□ -0.6
CUX1-206ENST00000437600 NLRP10Q86W26 655 aa11.29□□□□□ -0.6
CUX1-206ENST00000437600 GREM2Q9H772 168 aa11.29□□□□□ -0.6
CUX1-206ENST00000437600 GNPATO15228 680 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 GIMAP6Q6P9H5 292 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 LRSAM1Q6UWE0 723 aa11.28□□□□□ -0.6
CUX1-206ENST00000437600 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.28□□□□□ -0.6
CUX1-206ENST00000437600 TUBGCP6Q96RT7 1819 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms