RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 HIRAP54198 1017 aaPredicted RBP18.7■□□□□ 0.58
SDC1-204ENST00000429035 RPS8P62241 208 aaKnown RBP18.7■□□□□ 0.58
SDC1-204ENST00000429035 CCDC152Q4G0S7 254 aa18.7■□□□□ 0.58
SDC1-204ENST00000429035 ANKIB1Q9P2G1 1089 aa18.7■□□□□ 0.58
SDC1-204ENST00000429035 PCCAP05165 728 aaPredicted RBP18.69■□□□□ 0.58
SDC1-204ENST00000429035 TBC1D10BQ4KMP7 808 aaPredicted RBP18.69■□□□□ 0.58
SDC1-204ENST00000429035 RBM26Q5T8P6 1007 aaKnown RBP18.69■□□□□ 0.58
SDC1-204ENST00000429035 SAMD7Q7Z3H4 446 aa18.69■□□□□ 0.58
SDC1-204ENST00000429035 TSPYL6Q8N831 410 aa18.69■□□□□ 0.58
SDC1-204ENST00000429035 CCDC191Q8NCU4 936 aa18.69■□□□□ 0.58
SDC1-204ENST00000429035 TBC1D16Q8TBP0 767 aa18.69■□□□□ 0.58
SDC1-204ENST00000429035 MAP3K2Q9Y2U5 619 aa18.69■□□□□ 0.58
SDC1-204ENST00000429035 PSME4Q14997 1843 aa18.68■□□□□ 0.58
SDC1-204ENST00000429035 PDE8AO60658 829 aa18.68■□□□□ 0.58
SDC1-204ENST00000429035 AOC2O75106 756 aa18.68■□□□□ 0.58
SDC1-204ENST00000429035 METTL22Q9BUU2 404 aaPredicted RBP18.68■□□□□ 0.58
SDC1-204ENST00000429035 STK31Q9BXU1 1019 aa18.68■□□□□ 0.58
SDC1-204ENST00000429035 GGA1Q9UJY5 639 aa18.68■□□□□ 0.58
SDC1-204ENST00000429035 RTL9Q8NET4 1388 aa18.68■□□□□ 0.58
SDC1-204ENST00000429035 CCDC184Q52MB2 194 aa18.67■□□□□ 0.58
SDC1-204ENST00000429035 CDC37L1Q7L3B6 337 aa18.67■□□□□ 0.58
SDC1-204ENST00000429035 ZC3H15Q8WU90 426 aaKnown RBP18.67■□□□□ 0.58
SDC1-204ENST00000429035 ZC3H12CQ9C0D7 883 aaKnown RBP18.67■□□□□ 0.58
SDC1-204ENST00000429035 SAPCD2Q86UD0 394 aa18.66■□□□□ 0.58
SDC1-204ENST00000429035 USP48Q86UV5 1035 aa18.66■□□□□ 0.58
SDC1-204ENST00000429035 ANKRD18AQ8IVF6 992 aa18.66■□□□□ 0.58
SDC1-204ENST00000429035 CHMP4AQ9BY43 222 aa18.66■□□□□ 0.58
SDC1-204ENST00000429035 KCNQ5Q9NR82 932 aa18.66■□□□□ 0.58
SDC1-204ENST00000429035 TSKSQ9UJT2 592 aa18.66■□□□□ 0.58
SDC1-204ENST00000429035 NEXNQ0ZGT2 675 aa18.65■□□□□ 0.58
SDC1-204ENST00000429035 KIF4BQ2VIQ3 1234 aa18.65■□□□□ 0.58
SDC1-204ENST00000429035 DPF2Q92785 391 aa18.65■□□□□ 0.58
SDC1-204ENST00000429035 PI4KAP2A4QPH2 592 aa18.64■□□□□ 0.57
SDC1-204ENST00000429035 EGFRP00533 1210 aa18.64■□□□□ 0.57
SDC1-204ENST00000429035 RPS12P25398 132 aaKnown RBP18.64■□□□□ 0.57
SDC1-204ENST00000429035 CTSWP56202 376 aa18.64■□□□□ 0.57
SDC1-204ENST00000429035 DLK2Q6UY11 383 aa18.64■□□□□ 0.57
SDC1-204ENST00000429035 KRT26Q7Z3Y9 468 aa18.64■□□□□ 0.57
SDC1-204ENST00000429035 PI4KAP1Q8N8J0 262 aa18.64■□□□□ 0.57
SDC1-204ENST00000429035 PGAP2Q9UHJ9 254 aa18.64■□□□□ 0.57
SDC1-204ENST00000429035 ADM5C9JUS6 153 aa18.63■□□□□ 0.57
SDC1-204ENST00000429035 TWISTNBQ3B726 338 aaPredicted RBP18.63■□□□□ 0.57
SDC1-204ENST00000429035 KSR2Q6VAB6 950 aa18.63■□□□□ 0.57
SDC1-204ENST00000429035 DCPSQ96C86 337 aaKnown RBP18.63■□□□□ 0.57
SDC1-204ENST00000429035 CDC5LQ99459 802 aaKnown RBP18.63■□□□□ 0.57
SDC1-204ENST00000429035 PODXL2Q9NZ53 605 aa18.63■□□□□ 0.57
SDC1-204ENST00000429035 HUNKP57058 714 aa18.62■□□□□ 0.57
SDC1-204ENST00000429035 CWF19L2Q2TBE0 894 aaKnown RBP18.62■□□□□ 0.57
SDC1-204ENST00000429035 GGA3Q9NZ52 723 aa18.62■□□□□ 0.57
SDC1-204ENST00000429035 SALL2Q9Y467 1007 aaPredicted RBP18.62■□□□□ 0.57
SDC1-204ENST00000429035 XDHP47989 1333 aa18.62■□□□□ 0.57
SDC1-204ENST00000429035 CACNA1FO60840 1977 aa18.61■□□□□ 0.57
SDC1-204ENST00000429035 CASP8AP2Q9UKL3 1982 aa18.61■□□□□ 0.57
SDC1-204ENST00000429035 IGKV5-2P06315 115 aa18.61■□□□□ 0.57
SDC1-204ENST00000429035 FBXW7Q969H0 707 aa18.61■□□□□ 0.57
SDC1-204ENST00000429035 MRS2Q9HD23 443 aa18.61■□□□□ 0.57
SDC1-204ENST00000429035 ATP2B4P23634 1241 aa18.6■□□□□ 0.57
SDC1-204ENST00000429035 MAP2K2P36507 400 aa18.6■□□□□ 0.57
SDC1-204ENST00000429035 G2E3Q7L622 706 aa18.6■□□□□ 0.57
SDC1-204ENST00000429035 WWC1Q8IX03 1113 aa18.6■□□□□ 0.57
SDC1-204ENST00000429035 GREM2Q9H772 168 aa18.6■□□□□ 0.57
SDC1-204ENST00000429035 ASTN2O75129 1339 aaPredicted RBP18.59■□□□□ 0.57
SDC1-204ENST00000429035 VIL1P09327 827 aaKnown RBP18.59■□□□□ 0.57
SDC1-204ENST00000429035 RSBN1LQ6PCB5 846 aaPredicted RBP18.59■□□□□ 0.57
SDC1-204ENST00000429035 UBE3BQ7Z3V4 1068 aa18.59■□□□□ 0.57
SDC1-204ENST00000429035 SULF1Q8IWU6 871 aa18.59■□□□□ 0.57
SDC1-204ENST00000429035 HHIPL1Q96JK4 782 aa18.59■□□□□ 0.57
SDC1-204ENST00000429035 GBA2Q9HCG7 927 aaPredicted RBP18.59■□□□□ 0.57
SDC1-204ENST00000429035 NEURL1BA8MQ27 555 aa18.58■□□□□ 0.56
SDC1-204ENST00000429035 SLC4A2P04920 1241 aa18.58■□□□□ 0.56
SDC1-204ENST00000429035 CCDC27Q2M243 656 aa18.58■□□□□ 0.56
SDC1-204ENST00000429035 FANCIQ9NVI1 1328 aa18.57■□□□□ 0.56
SDC1-204ENST00000429035 FKBP5Q13451 457 aaPredicted RBP18.57■□□□□ 0.56
SDC1-204ENST00000429035 C2orf69Q8N8R5 385 aa18.57■□□□□ 0.56
SDC1-204ENST00000429035 TTLL11Q8NHH1 800 aa18.57■□□□□ 0.56
SDC1-204ENST00000429035 ABHD8Q96I13 439 aa18.57■□□□□ 0.56
SDC1-204ENST00000429035 AKAP11Q9UKA4 1901 aa18.57■□□□□ 0.56
SDC1-204ENST00000429035 MED23Q9ULK4 1368 aa18.56■□□□□ 0.56
SDC1-204ENST00000429035 ZNF646O15015 1829 aaPredicted RBP18.56■□□□□ 0.56
SDC1-204ENST00000429035 ANP32CO43423 234 aa18.56■□□□□ 0.56
SDC1-204ENST00000429035 IGHMBP2P38935 993 aaKnown RBP18.56■□□□□ 0.56
SDC1-204ENST00000429035 BRPF1P55201 1214 aaPredicted RBP18.56■□□□□ 0.56
SDC1-204ENST00000429035 FLIIQ13045 1269 aa18.56■□□□□ 0.56
SDC1-204ENST00000429035 NOGQ13253 232 aa18.56■□□□□ 0.56
SDC1-204ENST00000429035 ANGEL2Q5VTE6 544 aaKnown RBP18.56■□□□□ 0.56
SDC1-204ENST00000429035 IL16Q14005 1332 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 USP17L3A6NCW0 530 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 USP17L4A6NCW7 530 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 CA12O43570 354 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 FAM161AQ3B820 660 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 RGMBQ6NW40 437 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 USP17L1Q7RTZ2 530 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 AGBL3Q8NEM8 1001 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 MYH16Q9H6N6 1097 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 MINPP1Q9UNW1 487 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 A0A1B0GUL6 1792 aa18.55■□□□□ 0.56
SDC1-204ENST00000429035 WTIPA6NIX2 430 aaPredicted RBP18.54■□□□□ 0.56
SDC1-204ENST00000429035 CCT4P50991 539 aaKnown RBP18.54■□□□□ 0.56
SDC1-204ENST00000429035 SCARF1Q14162 830 aa18.54■□□□□ 0.56
SDC1-204ENST00000429035 CDCA5Q96FF9 252 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms