RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 RPS8P62241 208 aaKnown RBP10.71□□□□□ -0.69
LIG4-202ENST00000405925 STK38Q15208 465 aa10.71□□□□□ -0.69
LIG4-202ENST00000405925 SEC24BO95487 1268 aa10.71□□□□□ -0.69
LIG4-202ENST00000405925 CCT2P78371 535 aaKnown RBP10.71□□□□□ -0.69
LIG4-202ENST00000405925 MAGEB6Q8N7X4 407 aa10.71□□□□□ -0.69
LIG4-202ENST00000405925 LRRC2Q9BYS8 371 aa10.71□□□□□ -0.69
LIG4-202ENST00000405925 HMG20BQ9P0W2 317 aa10.71□□□□□ -0.69
LIG4-202ENST00000405925 GOLGA8BA8MQT2 603 aa10.71□□□□□ -0.7
LIG4-202ENST00000405925 RNF113AO15541 343 aaKnown RBP10.71□□□□□ -0.7
LIG4-202ENST00000405925 RAB11FIP4Q86YS3 637 aa10.71□□□□□ -0.7
LIG4-202ENST00000405925 SDF4Q9BRK5 362 aa10.71□□□□□ -0.7
LIG4-202ENST00000405925 GOLGA6L19H0YKK7 550 aa10.7□□□□□ -0.7
LIG4-202ENST00000405925 PPFIA3O75145 1194 aa10.7□□□□□ -0.7
LIG4-202ENST00000405925 EAF2Q96CJ1 260 aaPredicted RBP10.7□□□□□ -0.7
LIG4-202ENST00000405925 ARHGEF28Q8N1W1 1705 aaKnown RBP10.7□□□□□ -0.7
LIG4-202ENST00000405925 TSPY2A6NKD2 308 aa10.7□□□□□ -0.7
LIG4-202ENST00000405925 MFSD6Q6ZSS7 791 aa10.7□□□□□ -0.7
LIG4-202ENST00000405925 LPIN2Q92539 896 aa10.7□□□□□ -0.7
LIG4-202ENST00000405925 GREM2Q9H772 168 aa10.7□□□□□ -0.7
LIG4-202ENST00000405925 SH2B1Q9NRF2 756 aaPredicted RBP10.7□□□□□ -0.7
LIG4-202ENST00000405925 PES1O00541 588 aaKnown RBP10.7□□□□□ -0.7
LIG4-202ENST00000405925 MSNP26038 577 aaKnown RBP10.7□□□□□ -0.7
LIG4-202ENST00000405925 HIBADHP31937 336 aaKnown RBP10.7□□□□□ -0.7
LIG4-202ENST00000405925 TPD52L1Q16890 204 aaPredicted RBP10.7□□□□□ -0.7
LIG4-202ENST00000405925 RTN4Q9NQC3 1192 aaKnown RBP10.7□□□□□ -0.7
LIG4-202ENST00000405925 CIZ1Q9ULV3 898 aaPredicted RBP10.7□□□□□ -0.7
LIG4-202ENST00000405925 SLC12A7Q9Y666 1083 aa10.7□□□□□ -0.7
LIG4-202ENST00000405925 CD163L1Q9NR16 1453 aa10.7□□□□□ -0.7
LIG4-202ENST00000405925 KRT85P78386 507 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 GSTO1P78417 241 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 LRRC24Q50LG9 513 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 SOGA3Q5TF21 947 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 MICU3Q86XE3 530 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 NCOA7Q8NI08 942 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 CTCFLQ8NI51 663 aaPredicted RBP10.69□□□□□ -0.7
LIG4-202ENST00000405925 BRF1Q92994 677 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 EDC3Q96F86 508 aaKnown RBP10.69□□□□□ -0.7
LIG4-202ENST00000405925 SRP68Q9UHB9 627 aaKnown RBP10.69□□□□□ -0.7
LIG4-202ENST00000405925 SPATA31A6Q5VVP1 1343 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 KIF13AQ9H1H9 1805 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 TMEM67Q5HYA8 995 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 ZNF396Q96N95 335 aaPredicted RBP10.69□□□□□ -0.7
LIG4-202ENST00000405925 EYA3Q99504 573 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 SIGLEC1Q9BZZ2 1709 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 H0YIN7 160 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 TRAK2O60296 914 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 GSE1Q14687 1217 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 CAVIN1Q6NZI2 390 aaKnown RBP10.69□□□□□ -0.7
LIG4-202ENST00000405925 NLRP10Q86W26 655 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 OGFOD1Q8N543 542 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 FLAD1Q8NFF5 587 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 GGA1Q9UJY5 639 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 C3P01024 1663 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 RBM6P78332 1123 aaKnown RBP10.69□□□□□ -0.7
LIG4-202ENST00000405925 PDE4BQ07343 736 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 CCDC144CPQ8IYA2 1237 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 STX8Q9UNK0 236 aa10.69□□□□□ -0.7
LIG4-202ENST00000405925 GOLGA8AA7E2F4 631 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 LDHBP07195 334 aaKnown RBP10.68□□□□□ -0.7
LIG4-202ENST00000405925 GUCY1B3Q02153 619 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 VPS72Q15906 364 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 MYO5BQ9ULV0 1848 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 MAGEB6P1A0A0J9YX57 407 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 CCDC196A0A1B0GTZ2 297 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 ME1P48163 572 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 PICALMQ13492 652 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 NLGN1Q8N2Q7 840 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 PUS3Q9BZE2 481 aaKnown RBP10.68□□□□□ -0.7
LIG4-202ENST00000405925 COPRSQ9NQ92 184 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 SSH2Q76I76 1423 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 SPATA31A1Q5TZJ5 1347 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 MBD3O95983 291 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 HLA-DOAP06340 250 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 CCDC129Q6ZRS4 1044 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 JDP2Q8WYK2 163 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 FAM227BQ96M60 508 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 HOOK1Q9UJC3 728 aaKnown RBP10.68□□□□□ -0.7
LIG4-202ENST00000405925 DENND2AQ9ULE3 1009 aa10.68□□□□□ -0.7
LIG4-202ENST00000405925 MROH5Q6ZUA9 1318 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 MCM5P33992 734 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 HLFQ16534 295 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 DPP8Q6V1X1 898 aaPredicted RBP10.67□□□□□ -0.7
LIG4-202ENST00000405925 CCDC43Q96MW1 224 aaKnown RBP10.67□□□□□ -0.7
LIG4-202ENST00000405925 CCDC171Q6TFL3 1326 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 KINO60870 393 aaKnown RBP10.67□□□□□ -0.7
LIG4-202ENST00000405925 MBD4O95243 580 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 ZAP70P43403 619 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 SASS6Q6UVJ0 657 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 CCAR1Q8IX12 1150 aaKnown RBP10.67□□□□□ -0.7
LIG4-202ENST00000405925 MARCH10Q8NA82 808 aaPredicted RBP10.67□□□□□ -0.7
LIG4-202ENST00000405925 KBTBD3Q8NAB2 608 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 IGKV5-2P06315 115 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 KIAA2012Q0VF49 1180 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 CCDC96Q2M329 555 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 CCDC47Q96A33 483 aaKnown RBP10.67□□□□□ -0.7
LIG4-202ENST00000405925 OVOS2A0A0G2JMS6 1433 aa10.67□□□□□ -0.7
LIG4-202ENST00000405925 ERVV-1B6SEH8 477 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 ANAPC15P60006 121 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 CATIPQ7Z7H3 387 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 NECAB1Q8N987 351 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms