RNA–Protein interactions for RNA: ENST00000380747.5

HMGN1-202, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3 BASIC

Gene HMGN1, Length 709 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-202ENST00000380747 DDX46Q7L014 1031 aaKnown RBP11.73□□□□□ -0.53
HMGN1-202ENST00000380747 LINS1Q8NG48 757 aa11.73□□□□□ -0.53
HMGN1-202ENST00000380747 L3MBTL3Q96JM7 780 aaPredicted RBP11.73□□□□□ -0.53
HMGN1-202ENST00000380747 CRAMP1Q96RY5 1269 aa11.73□□□□□ -0.53
HMGN1-202ENST00000380747 TAOK3Q9H2K8 898 aa11.73□□□□□ -0.53
HMGN1-202ENST00000380747 CCDC88AQ3V6T2 1871 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 ABCC4O15439 1325 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 ZBED9Q6R2W3 1325 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 IQCA1LA6NCM1 817 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 HAX1O00165 279 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 PPEF1O14829 653 aaPredicted RBP11.72□□□□□ -0.53
HMGN1-202ENST00000380747 FOXN1O15353 648 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 CT47B1P0C2W7 299 aaPredicted RBP11.72□□□□□ -0.53
HMGN1-202ENST00000380747 HSP90B1P14625 803 aaKnown RBP11.72□□□□□ -0.53
HMGN1-202ENST00000380747 CCDC93Q567U6 631 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 OLFM4Q6UX06 510 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 LDHDQ86WU2 507 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 TMEM106CQ9BVX2 250 aa11.72□□□□□ -0.53
HMGN1-202ENST00000380747 MKRN1Q9UHC7 482 aaKnown RBP11.72□□□□□ -0.53
HMGN1-202ENST00000380747 CTCFP49711 727 aaPredicted RBP11.71□□□□□ -0.53
HMGN1-202ENST00000380747 GCKRQ14397 625 aa11.71□□□□□ -0.53
HMGN1-202ENST00000380747 SF3B3Q15393 1217 aaKnown RBP11.71□□□□□ -0.53
HMGN1-202ENST00000380747 BEND3Q5T5X7 828 aa11.71□□□□□ -0.53
HMGN1-202ENST00000380747 UBE3BQ7Z3V4 1068 aa11.71□□□□□ -0.53
HMGN1-202ENST00000380747 C7orf43Q8WVR3 580 aa11.71□□□□□ -0.53
HMGN1-202ENST00000380747 CCDC85AQ96PX6 553 aaPredicted RBP11.71□□□□□ -0.53
HMGN1-202ENST00000380747 TMX4Q9H1E5 349 aaPredicted RBP11.71□□□□□ -0.53
HMGN1-202ENST00000380747 SLX4Q8IY92 1834 aa11.71□□□□□ -0.54
HMGN1-202ENST00000380747 CACNA1SQ13698 1873 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 PTPRCP08575 1304 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 CDHR2Q9BYE9 1310 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 H7C1W4 665 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 PDE8AO60658 829 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 DDNO94850 711 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-202ENST00000380747 POTEIP0CG38 1075 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 POTEJP0CG39 1038 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 GRAPQ13588 217 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 RTKN2Q8IZC4 609 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 GRAPLQ8TC17 118 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-202ENST00000380747 SRCIN1Q9C0H9 1055 aa11.7□□□□□ -0.54
HMGN1-202ENST00000380747 BBOX1O75936 387 aa11.69□□□□□ -0.54
HMGN1-202ENST00000380747 SLC34A2O95436 690 aa11.69□□□□□ -0.54
HMGN1-202ENST00000380747 RARSP54136 660 aaKnown RBP11.69□□□□□ -0.54
HMGN1-202ENST00000380747 FKBP4Q02790 459 aaKnown RBP eCLIP11.69□□□□□ -0.54
HMGN1-202ENST00000380747 CCDC152Q4G0S7 254 aa11.69□□□□□ -0.54
HMGN1-202ENST00000380747 CC2D2BQ6DHV5 1058 aa11.69□□□□□ -0.54
HMGN1-202ENST00000380747 SLC51AQ86UW1 340 aa11.69□□□□□ -0.54
HMGN1-202ENST00000380747 FBXO22Q8NEZ5 403 aa11.69□□□□□ -0.54
HMGN1-202ENST00000380747 AIDAQ96BJ3 306 aa11.69□□□□□ -0.54
HMGN1-202ENST00000380747 TAF1DQ9H5J8 278 aaPredicted RBP11.69□□□□□ -0.54
HMGN1-202ENST00000380747 WBP1LQ9NX94 342 aa11.69□□□□□ -0.54
HMGN1-202ENST00000380747 SCN4AP35499 1836 aa11.69□□□□□ -0.54
HMGN1-202ENST00000380747 DDX60Q8IY21 1712 aaKnown RBP11.69□□□□□ -0.54
HMGN1-202ENST00000380747 TMEM88BA6NKF7 163 aa11.68□□□□□ -0.54
HMGN1-202ENST00000380747 ALDH1L1O75891 902 aa11.68□□□□□ -0.54
HMGN1-202ENST00000380747 ITGBL1O95965 494 aaPredicted RBP11.68□□□□□ -0.54
HMGN1-202ENST00000380747 CTSWP56202 376 aa11.68□□□□□ -0.54
HMGN1-202ENST00000380747 EVX2Q03828 476 aa11.68□□□□□ -0.54
HMGN1-202ENST00000380747 CELF1Q92879 486 aaKnown RBP11.68□□□□□ -0.54
HMGN1-202ENST00000380747 C9orf78Q9NZ63 289 aaPredicted RBP11.68□□□□□ -0.54
HMGN1-202ENST00000380747 NOB1Q9ULX3 412 aaKnown RBP11.68□□□□□ -0.54
HMGN1-202ENST00000380747 ATP6V0A2Q9Y487 856 aa11.68□□□□□ -0.54
HMGN1-202ENST00000380747 LAMB2P55268 1798 aa11.68□□□□□ -0.54
HMGN1-202ENST00000380747 CACNA1FO60840 1977 aa11.68□□□□□ -0.54
HMGN1-202ENST00000380747 RASSF10A6NK89 507 aa11.67□□□□□ -0.54
HMGN1-202ENST00000380747 PPP1R37O75864 691 aa11.67□□□□□ -0.54
HMGN1-202ENST00000380747 VEGFBP49765 207 aa11.67□□□□□ -0.54
HMGN1-202ENST00000380747 SP8Q8IXZ3 490 aa11.67□□□□□ -0.54
HMGN1-202ENST00000380747 SEC31BQ9NQW1 1179 aa11.67□□□□□ -0.54
HMGN1-202ENST00000380747 ZNF277Q9NRM2 450 aaPredicted RBP11.67□□□□□ -0.54
HMGN1-202ENST00000380747 GRM8O00222 908 aa11.66□□□□□ -0.54
HMGN1-202ENST00000380747 BCAR3O75815 825 aa11.66□□□□□ -0.54
HMGN1-202ENST00000380747 CASP7P55210 303 aa11.66□□□□□ -0.54
HMGN1-202ENST00000380747 GRIPAP1Q4V328 841 aa11.66□□□□□ -0.54
HMGN1-202ENST00000380747 TMC4Q7Z404 712 aa11.66□□□□□ -0.54
HMGN1-202ENST00000380747 TTLL11Q8NHH1 800 aa11.66□□□□□ -0.54
HMGN1-202ENST00000380747 API5Q9BZZ5 524 aaKnown RBP11.66□□□□□ -0.54
HMGN1-202ENST00000380747 KIF16BQ96L93 1317 aa11.65□□□□□ -0.54
HMGN1-202ENST00000380747 ADAMTSL1Q8N6G6 1762 aa11.65□□□□□ -0.54
HMGN1-202ENST00000380747 BRPF1P55201 1214 aaPredicted RBP11.65□□□□□ -0.54
HMGN1-202ENST00000380747 RPS8P62241 208 aaKnown RBP11.65□□□□□ -0.54
HMGN1-202ENST00000380747 DPP8Q6V1X1 898 aaPredicted RBP11.65□□□□□ -0.54
HMGN1-202ENST00000380747 PNMA8AQ86V59 439 aaPredicted RBP11.65□□□□□ -0.54
HMGN1-202ENST00000380747 ANKRD18AQ8IVF6 992 aa11.65□□□□□ -0.54
HMGN1-202ENST00000380747 MPNDQ8N594 471 aa11.65□□□□□ -0.54
HMGN1-202ENST00000380747 FRAT1Q92837 279 aaPredicted RBP11.65□□□□□ -0.54
HMGN1-202ENST00000380747 PSMD1Q99460 953 aa11.65□□□□□ -0.54
HMGN1-202ENST00000380747 PLA2G12BQ9BX93 195 aa11.65□□□□□ -0.54
HMGN1-202ENST00000380747 GREM2Q9H772 168 aa11.65□□□□□ -0.54
HMGN1-202ENST00000380747 HACL1Q9UJ83 578 aa11.65□□□□□ -0.54
HMGN1-202ENST00000380747 CHMP3Q9Y3E7 222 aa11.65□□□□□ -0.54
HMGN1-202ENST00000380747 SNED1Q8TER0 1413 aa11.64□□□□□ -0.55
HMGN1-202ENST00000380747 GALR2O43603 387 aaPredicted RBP11.64□□□□□ -0.55
HMGN1-202ENST00000380747 IARSP41252 1262 aaKnown RBP11.64□□□□□ -0.55
HMGN1-202ENST00000380747 MAP2K1Q02750 393 aaPredicted RBP11.64□□□□□ -0.55
HMGN1-202ENST00000380747 FAM161AQ3B820 660 aa11.64□□□□□ -0.55
HMGN1-202ENST00000380747 SUPT20HQ8NEM7 779 aa11.64□□□□□ -0.55
HMGN1-202ENST00000380747 CDC5LQ99459 802 aaKnown RBP11.64□□□□□ -0.55
HMGN1-202ENST00000380747 COL4A1P02462 1669 aa11.63□□□□□ -0.55
HMGN1-202ENST00000380747 IPO8O15397 1037 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms