RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SIRT2Q8IXJ6 389 aa27.61■■■□□ 2.01
SHMT1-203ENST00000354098 SSH3Q8TE77 659 aa27.61■■■□□ 2.01
SHMT1-203ENST00000354098 CNNM1Q9NRU3 951 aa27.61■■■□□ 2.01
SHMT1-203ENST00000354098 LRRC37AA6NMS7 1700 aa27.61■■■□□ 2.01
SHMT1-203ENST00000354098 NFKBIEO00221 500 aa27.6■■■□□ 2.01
SHMT1-203ENST00000354098 SIL1Q9H173 461 aa27.6■■■□□ 2.01
SHMT1-203ENST00000354098 NSFL1CQ9UNZ2 370 aaKnown RBP27.6■■■□□ 2.01
SHMT1-203ENST00000354098 DCAF8L1A6NGE4 600 aa27.59■■■□□ 2.01
SHMT1-203ENST00000354098 RPAP2Q8IXW5 612 aaPredicted RBP27.59■■■□□ 2.01
SHMT1-203ENST00000354098 RTKN2Q8IZC4 609 aa27.59■■■□□ 2.01
SHMT1-203ENST00000354098 MPNDQ8N594 471 aa27.59■■■□□ 2.01
SHMT1-203ENST00000354098 COPRSQ9NQ92 184 aa27.59■■■□□ 2.01
SHMT1-203ENST00000354098 RASSF7Q02833 373 aa27.59■■■□□ 2.01
SHMT1-203ENST00000354098 RIPOR2Q9Y4F9 1068 aa27.59■■■□□ 2.01
SHMT1-203ENST00000354098 WTIPA6NIX2 430 aaPredicted RBP27.58■■■□□ 2.01
SHMT1-203ENST00000354098 CHRNDQ07001 517 aa27.58■■■□□ 2.01
SHMT1-203ENST00000354098 HELBQ8NG08 1087 aaPredicted RBP27.58■■■□□ 2.01
SHMT1-203ENST00000354098 PCDHB15Q9Y5E8 787 aa27.58■■■□□ 2.01
SHMT1-203ENST00000354098 EYA2O00167 538 aa27.57■■■□□ 2
SHMT1-203ENST00000354098 DPP8Q6V1X1 898 aaPredicted RBP27.57■■■□□ 2
SHMT1-203ENST00000354098 ANKIB1Q9P2G1 1089 aa27.57■■■□□ 2
SHMT1-203ENST00000354098 FER1L6Q2WGJ9 1857 aa27.56■■■□□ 2
SHMT1-203ENST00000354098 ATG9AQ7Z3C6 839 aa27.56■■■□□ 2
SHMT1-203ENST00000354098 TAF5LO75529 589 aa27.56■■■□□ 2
SHMT1-203ENST00000354098 PRELPP51888 382 aa27.56■■■□□ 2
SHMT1-203ENST00000354098 TAOK3Q9H2K8 898 aa27.56■■■□□ 2
SHMT1-203ENST00000354098 FKBP4Q02790 459 aaKnown RBP eCLIP27.55■■■□□ 2
SHMT1-203ENST00000354098 GRIPAP1Q4V328 841 aa27.55■■■□□ 2
SHMT1-203ENST00000354098 PODXL2Q9NZ53 605 aa27.55■■■□□ 2
SHMT1-203ENST00000354098 POLLQ9UGP5 575 aa27.55■■■□□ 2
SHMT1-203ENST00000354098 XDHP47989 1333 aa27.54■■■□□ 2
SHMT1-203ENST00000354098 PSMD1Q99460 953 aa27.54■■■□□ 2
SHMT1-203ENST00000354098 DUOX1Q9NRD9 1551 aa27.54■■■□□ 2
SHMT1-203ENST00000354098 SNAP23O00161 211 aa27.53■■■□□ 2
SHMT1-203ENST00000354098 TBC1D16Q8TBP0 767 aa27.53■■■□□ 2
SHMT1-203ENST00000354098 RTFDC1Q9BY42 306 aaPredicted RBP27.53■■■□□ 2
SHMT1-203ENST00000354098 ANKRD2Q9GZV1 360 aa27.53■■■□□ 2
SHMT1-203ENST00000354098 ZNF277Q9NRM2 450 aaPredicted RBP27.53■■■□□ 2
SHMT1-203ENST00000354098 LTBP1Q14766 1721 aa27.53■■■□□ 2
SHMT1-203ENST00000354098 CIAO1O76071 339 aa27.52■■■□□ 2
SHMT1-203ENST00000354098 GPR101Q96P66 508 aaPredicted RBP27.52■■■□□ 2
SHMT1-203ENST00000354098 LTBP3Q9NS15 1303 aa27.52■■■□□ 2
SHMT1-203ENST00000354098 METTL24Q5JXM2 366 aa27.52■■■□□ 2
SHMT1-203ENST00000354098 FBXO3Q9UK99 471 aa27.52■■■□□ 2
SHMT1-203ENST00000354098 MROH5Q6ZUA9 1318 aa27.51■■□□□ 1.99
SHMT1-203ENST00000354098 C6orf229H3BNL8 230 aa27.51■■□□□ 1.99
SHMT1-203ENST00000354098 SURF6O75683 361 aaKnown RBP27.51■■□□□ 1.99
SHMT1-203ENST00000354098 UFL1O94874 794 aa27.51■■□□□ 1.99
SHMT1-203ENST00000354098 GGA1Q9UJY5 639 aa27.51■■□□□ 1.99
SHMT1-203ENST00000354098 HMMRO75330 724 aa27.5■■□□□ 1.99
SHMT1-203ENST00000354098 AAMPQ13685 434 aa27.5■■□□□ 1.99
SHMT1-203ENST00000354098 VGLL2Q8N8G2 317 aa27.5■■□□□ 1.99
SHMT1-203ENST00000354098 IL15P40933 162 aaPredicted RBP27.49■■□□□ 1.99
SHMT1-203ENST00000354098 ATP2B4P23634 1241 aa27.49■■□□□ 1.99
SHMT1-203ENST00000354098 G3BP1Q13283 466 aaKnown RBP eCLIP27.49■■□□□ 1.99
SHMT1-203ENST00000354098 EXOC6BQ9Y2D4 811 aa27.49■■□□□ 1.99
SHMT1-203ENST00000354098 NOP58Q9Y2X3 529 aaKnown RBP27.49■■□□□ 1.99
SHMT1-203ENST00000354098 A0A1B0GUL6 1792 aa27.48■■□□□ 1.99
SHMT1-203ENST00000354098 SUPT20HQ8NEM7 779 aa27.48■■□□□ 1.99
SHMT1-203ENST00000354098 LEMD3Q9Y2U8 911 aa27.48■■□□□ 1.99
SHMT1-203ENST00000354098 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.48■■□□□ 1.99
SHMT1-203ENST00000354098 ZNF804BA4D1E1 1349 aa27.47■■□□□ 1.99
SHMT1-203ENST00000354098 PDE8BO95263 885 aa27.47■■□□□ 1.99
SHMT1-203ENST00000354098 AOC3Q16853 763 aa27.47■■□□□ 1.99
SHMT1-203ENST00000354098 RIMBP2O15034 1052 aa27.46■■□□□ 1.99
SHMT1-203ENST00000354098 LMNB1P20700 586 aa27.46■■□□□ 1.99
SHMT1-203ENST00000354098 IARSP41252 1262 aaKnown RBP27.46■■□□□ 1.99
SHMT1-203ENST00000354098 SASH1O94885 1247 aa27.46■■□□□ 1.99
SHMT1-203ENST00000354098 KLRK1P26718 216 aa27.46■■□□□ 1.99
SHMT1-203ENST00000354098 KCNJ4P48050 445 aa27.46■■□□□ 1.99
SHMT1-203ENST00000354098 TFCP2Q12800 502 aa27.46■■□□□ 1.99
SHMT1-203ENST00000354098 WASHC4Q2M389 1173 aa27.46■■□□□ 1.99
SHMT1-203ENST00000354098 CEP126Q9P2H0 1117 aa27.46■■□□□ 1.99
SHMT1-203ENST00000354098 OS9Q13438 667 aaPredicted RBP27.45■■□□□ 1.98
SHMT1-203ENST00000354098 PPIP5K2O43314 1243 aa27.44■■□□□ 1.98
SHMT1-203ENST00000354098 C9orf131Q5VYM1 1079 aa27.44■■□□□ 1.98
SHMT1-203ENST00000354098 TXNRD3Q86VQ6 643 aa27.44■■□□□ 1.98
SHMT1-203ENST00000354098 RNF181Q9P0P0 153 aa27.44■■□□□ 1.98
SHMT1-203ENST00000354098 SBF1O95248 1867 aa27.44■■□□□ 1.98
SHMT1-203ENST00000354098 KIAA2012Q0VF49 1180 aa27.43■■□□□ 1.98
SHMT1-203ENST00000354098 EYA3Q99504 573 aa27.43■■□□□ 1.98
SHMT1-203ENST00000354098 COL4A5P29400 1685 aa27.43■■□□□ 1.98
SHMT1-203ENST00000354098 LARGE2Q8N3Y3 721 aa27.43■■□□□ 1.98
SHMT1-203ENST00000354098 ZC3H12CQ9C0D7 883 aaKnown RBP27.43■■□□□ 1.98
SHMT1-203ENST00000354098 UBE4AQ14139 1066 aa27.42■■□□□ 1.98
SHMT1-203ENST00000354098 CCDC88AQ3V6T2 1871 aa27.42■■□□□ 1.98
SHMT1-203ENST00000354098 APBB1O00213 710 aa27.41■■□□□ 1.98
SHMT1-203ENST00000354098 FGFR2P21802 821 aa27.41■■□□□ 1.98
SHMT1-203ENST00000354098 VPS33BQ9H267 617 aa27.41■■□□□ 1.98
SHMT1-203ENST00000354098 IRS2Q9Y4H2 1338 aa27.41■■□□□ 1.98
SHMT1-203ENST00000354098 PUM3Q15397 648 aaKnown RBP27.4■■□□□ 1.98
SHMT1-203ENST00000354098 MED23Q9ULK4 1368 aa27.4■■□□□ 1.98
SHMT1-203ENST00000354098 NEFLP07196 543 aa27.4■■□□□ 1.98
SHMT1-203ENST00000354098 DOK7Q18PE1 504 aa27.4■■□□□ 1.98
SHMT1-203ENST00000354098 DCTPP1Q9H773 170 aa27.4■■□□□ 1.98
SHMT1-203ENST00000354098 HDAC1Q13547 482 aaPredicted RBP27.39■■□□□ 1.97
SHMT1-203ENST00000354098 IGHDP01880 384 aa27.38■■□□□ 1.97
SHMT1-203ENST00000354098 TIMM10P62072 90 aa27.38■■□□□ 1.97
SHMT1-203ENST00000354098 ATP2B3Q16720 1220 aa27.38■■□□□ 1.97
SHMT1-203ENST00000354098 HSP90AB4PQ58FF6 505 aa27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms